RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 RNASE8Q8TDE3 154 aaKnown RBP8.78□□□□□ -1
CCDC88A-207ENST00000436346 PYGO1Q9Y3Y4 419 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 X6R8D5 127 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 TIMM17BO60830 172 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 C9orf116Q5BN46 136 aaPredicted RBP8.78□□□□□ -1
CCDC88A-207ENST00000436346 MBD6Q96DN6 1003 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 ESRGQ1W209 222 aa8.77□□□□□ -1.01
CCDC88A-207ENST00000436346 SMIM11BQ8TCY0 68 aa8.77□□□□□ -1.01
CCDC88A-207ENST00000436346 FAM30AQ9NZY2 134 aa8.77□□□□□ -1.01
CCDC88A-207ENST00000436346 CYSRT1A8MQ03 144 aa8.77□□□□□ -1.01
CCDC88A-207ENST00000436346 MRGPRG-AS1Q2M3A8 158 aa8.77□□□□□ -1.01
CCDC88A-207ENST00000436346 Q8IZM0 81 aa8.76□□□□□ -1.01
CCDC88A-207ENST00000436346 MAPKAPK5-AS1Q8N8E1 139 aa8.76□□□□□ -1.01
CCDC88A-207ENST00000436346 SERP1Q9Y6X1 66 aa8.76□□□□□ -1.01
CCDC88A-207ENST00000436346 EDN2P20800 178 aa8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 RETNLBQ9BQ08 111 aa8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 A6NED7 52 aa8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 ATP5EP56381 51 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 KRTAP10-9P60411 292 aa8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 PRYO14603 147 aa8.75□□□□□ -1.01
CCDC88A-207ENST00000436346 TEP1Q99973 2627 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-207ENST00000436346 LINC01556Q5JQF7 62 aa8.74□□□□□ -1.01
CCDC88A-207ENST00000436346 C1orf137Q5JT78 98 aa8.74□□□□□ -1.01
CCDC88A-207ENST00000436346 UQCRQO14949 82 aa8.74□□□□□ -1.01
CCDC88A-207ENST00000436346 NDUFC2-KCTD14E9PQ53 114 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 PRR4Q16378 134 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 AVPP01185 164 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 Q8N9L7 120 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 FSHBP01225 129 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 Q6ZTC4 211 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 IGHV6-1A0A0B4J1U7 121 aa8.73□□□□□ -1.01
CCDC88A-207ENST00000436346 POM121L12Q8N7R1 296 aa8.72□□□□□ -1.01
CCDC88A-207ENST00000436346 NBEAL1Q6ZS30 2694 aa8.72□□□□□ -1.01
CCDC88A-207ENST00000436346 A0A0U1RQV1 116 aa8.71□□□□□ -1.01
CCDC88A-207ENST00000436346 C1orf134Q5TEV5 83 aa8.71□□□□□ -1.01
CCDC88A-207ENST00000436346 COL6A5A8TX70 2615 aa8.71□□□□□ -1.01
CCDC88A-207ENST00000436346 NDUFC1O43677 76 aa8.71□□□□□ -1.01
CCDC88A-207ENST00000436346 C11orf21Q9P2W6 132 aa8.71□□□□□ -1.02
CCDC88A-207ENST00000436346 CDC42SE2Q9NRR3 84 aa8.71□□□□□ -1.02
CCDC88A-207ENST00000436346 C6orf223Q8N319 242 aa8.7□□□□□ -1.02
CCDC88A-207ENST00000436346 UNQ6190/PRO20217Q6UXQ8 127 aa8.7□□□□□ -1.02
CCDC88A-207ENST00000436346 V9GYY9 64 aa8.7□□□□□ -1.02
CCDC88A-207ENST00000436346 GAS8-AS1O95177 125 aa8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 IGLV1-51P01701 117 aa8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 A0A0C4DFX4 3053 aa8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 SERP2Q8N6R1 65 aa8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 TRBV10-3A0A0K0K1G6 114 aa8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 PRR3P79522 188 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-207ENST00000436346 MRPS12O15235 138 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 GCN1Q92616 2671 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 CRIP2P52943 208 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 LST1O00453 97 aa8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 ODF3L2Q3SX64 289 aa8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 FAM240AA0A1B0GVK7 77 aa8.68□□□□□ -1.02
CCDC88A-207ENST00000436346 COX6A2Q02221 97 aa8.67□□□□□ -1.02
CCDC88A-207ENST00000436346 Q8N814 137 aa8.67□□□□□ -1.02
CCDC88A-207ENST00000436346 MUC7Q8TAX7 377 aa8.67□□□□□ -1.02
CCDC88A-207ENST00000436346 CELA1Q9UNI1 258 aa8.66□□□□□ -1.02
CCDC88A-207ENST00000436346 Q9BRP9 147 aa8.66□□□□□ -1.02
CCDC88A-207ENST00000436346 CNFNQ9BYD5 112 aa8.66□□□□□ -1.02
CCDC88A-207ENST00000436346 EGFEM1PQ0D2K5 195 aa8.65□□□□□ -1.02
CCDC88A-207ENST00000436346 SBSPONQ8IVN8 264 aa8.65□□□□□ -1.03
CCDC88A-207ENST00000436346 C16orf95Q9H693 158 aa8.64□□□□□ -1.03
CCDC88A-207ENST00000436346 C2orf91Q6ZV80 131 aa8.63□□□□□ -1.03
CCDC88A-207ENST00000436346 UNC79Q9P2D8 2635 aa8.63□□□□□ -1.03
CCDC88A-207ENST00000436346 POLR2KP53803 58 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-207ENST00000436346 C2orf48Q96LS8 159 aa8.63□□□□□ -1.03
CCDC88A-207ENST00000436346 FHL2Q14192 279 aa8.63□□□□□ -1.03
CCDC88A-207ENST00000436346 TRBV7-6A0A0J9YX20 115 aa8.62□□□□□ -1.03
CCDC88A-207ENST00000436346 CFAP54Q96N23 3096 aa8.62□□□□□ -1.03
CCDC88A-207ENST00000436346 LINC00337Q8N6G1 96 aa8.62□□□□□ -1.03
CCDC88A-207ENST00000436346 LINC00242Q5T6M2 205 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 ITPR2Q14571 2701 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 A0A087WYN8 130 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 LINC00694P0DN24 101 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 IGLV4-60A0A075B6I1 120 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 CHCHD7Q9BUK0 85 aa8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 NHLRC4P0CG21 123 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-207ENST00000436346 PRLHP81277 87 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 Q6JHZ5 121 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 NTM-AS1Q6ZSK4 140 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 LAMA2P24043 3122 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 IGIPA6NJ69 53 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 SMIM1B2RUZ4 78 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 SPINK1P00995 79 aa8.6□□□□□ -1.03
CCDC88A-207ENST00000436346 NOTCH1P46531 2555 aa8.59□□□□□ -1.03
CCDC88A-207ENST00000436346 STAB1Q9NY15 2570 aa8.59□□□□□ -1.03
CCDC88A-207ENST00000436346 FHL3Q13643 280 aa8.59□□□□□ -1.03
CCDC88A-207ENST00000436346 LINC01547P58512 204 aaPredicted RBP8.59□□□□□ -1.03
CCDC88A-207ENST00000436346 IMUPQ9GZP8 106 aa8.58□□□□□ -1.04
CCDC88A-207ENST00000436346 LYPD5Q6UWN5 251 aa8.58□□□□□ -1.04
CCDC88A-207ENST00000436346 SETXQ7Z333 2677 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-207ENST00000436346 LIMD2Q9BT23 127 aa8.58□□□□□ -1.04
CCDC88A-207ENST00000436346 YPEL4Q96NS1 127 aa8.57□□□□□ -1.04
CCDC88A-207ENST00000436346 F8WDY8 70 aa8.56□□□□□ -1.04
CCDC88A-207ENST00000436346 DEFB116Q30KQ4 102 aa8.56□□□□□ -1.04
CCDC88A-207ENST00000436346 A0A1B0GUV1 79 aa8.56□□□□□ -1.04
CCDC88A-207ENST00000436346 MDFIQ99750 246 aa8.56□□□□□ -1.04
CCDC88A-207ENST00000436346 A8MTW9 85 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms