RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 STPG4Q8N801 248 aa7.27□□□□□ -1.25
COL28A1-203ENST00000435823 CST9LQ9H4G1 147 aa7.27□□□□□ -1.25
COL28A1-203ENST00000435823 PLAC8Q9NZF1 115 aa7.27□□□□□ -1.25
COL28A1-203ENST00000435823 A0A096LNJ9 63 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 TINCRA0A1B0GVN0 87 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 ATP5LO75964 103 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 PTTG1IPP53801 180 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 NDUFA6P56556 154 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 RPL37AP61513 92 aaKnown RBP7.26□□□□□ -1.25
COL28A1-203ENST00000435823 RPL18AQ02543 176 aaKnown RBP7.26□□□□□ -1.25
COL28A1-203ENST00000435823 GAGE2BQ13066 116 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 PMCHL1Q16048 86 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 LINC00469Q8N7U9 141 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 CHCHD1Q96BP2 118 aaKnown RBP7.26□□□□□ -1.25
COL28A1-203ENST00000435823 TOMM7Q9P0U1 55 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 CDKN2A-AS1Q9UH64 79 aa7.26□□□□□ -1.25
COL28A1-203ENST00000435823 SRRM2Q9UQ35 2752 aaKnown RBP7.26□□□□□ -1.25
COL28A1-203ENST00000435823 TRGC2P03986 189 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 CKS1BP61024 79 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 KIAA0087Q14695 138 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 PDZD11Q5EBL8 140 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 KRTAP5-3Q6L8H2 238 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 UNQ6190/PRO20217Q6UXQ8 127 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 C7orf33Q8WU49 177 aa7.25□□□□□ -1.25
COL28A1-203ENST00000435823 TRBV30A0A0K0K1B3 111 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 C6orf226Q5I0X4 101 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 C10orf25Q5T742 122 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 BAGE3Q86Y29 109 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 Q8IZM0 81 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 C6orf48Q9UBA6 75 aa7.24□□□□□ -1.25
COL28A1-203ENST00000435823 IGLV5-45A0A087WSX0 123 aa7.23□□□□□ -1.25
COL28A1-203ENST00000435823 COLCA2A8K830 154 aa7.23□□□□□ -1.25
COL28A1-203ENST00000435823 H3BRM9 83 aa7.23□□□□□ -1.25
COL28A1-203ENST00000435823 C2orf82Q6UX34 121 aa7.23□□□□□ -1.25
COL28A1-203ENST00000435823 SMIM1B2RUZ4 78 aa7.22□□□□□ -1.25
COL28A1-203ENST00000435823 HSBP1O75506 76 aa7.22□□□□□ -1.25
COL28A1-203ENST00000435823 TLX1NBP0CAT3 122 aa7.22□□□□□ -1.25
COL28A1-203ENST00000435823 IGLC3P0DOY3 106 aa7.22□□□□□ -1.25
COL28A1-203ENST00000435823 CXCL5P42830 114 aa7.22□□□□□ -1.25
COL28A1-203ENST00000435823 KRTAP10-4P60372 401 aaPredicted RBP7.21□□□□□ -1.26
COL28A1-203ENST00000435823 LCE4AQ5TA78 99 aa7.21□□□□□ -1.26
COL28A1-203ENST00000435823 SPINK8P0C7L1 97 aa7.2□□□□□ -1.26
COL28A1-203ENST00000435823 C9orf116Q5BN46 136 aaPredicted RBP7.2□□□□□ -1.26
COL28A1-203ENST00000435823 Q6ZRP5 223 aa7.2□□□□□ -1.26
COL28A1-203ENST00000435823 COX7B2Q8TF08 81 aa7.2□□□□□ -1.26
COL28A1-203ENST00000435823 NDUFC2-KCTD14E9PQ53 114 aa7.19□□□□□ -1.26
COL28A1-203ENST00000435823 F8VRH5 84 aa7.19□□□□□ -1.26
COL28A1-203ENST00000435823 GAGE2EQ4V326 116 aa7.19□□□□□ -1.26
COL28A1-203ENST00000435823 IFI27L1Q96BM0 104 aa7.19□□□□□ -1.26
COL28A1-203ENST00000435823 GAGE2DQ9UEU5 116 aa7.19□□□□□ -1.26
COL28A1-203ENST00000435823 A0A1W2PNN7 141 aa7.18□□□□□ -1.26
COL28A1-203ENST00000435823 SCO1O75880 301 aa7.18□□□□□ -1.26
COL28A1-203ENST00000435823 ZNF22P17026 224 aaPredicted RBP7.18□□□□□ -1.26
COL28A1-203ENST00000435823 FAM19A2Q8N3H0 131 aa7.18□□□□□ -1.26
COL28A1-203ENST00000435823 CHTOPQ9Y3Y2 248 aaKnown RBP7.18□□□□□ -1.26
COL28A1-203ENST00000435823 TRAV12-1A0A0B4J245 112 aa7.17□□□□□ -1.26
COL28A1-203ENST00000435823 SERF1AO75920 110 aa7.17□□□□□ -1.26
COL28A1-203ENST00000435823 TMEM170BQ5T4T1 132 aa7.17□□□□□ -1.26
COL28A1-203ENST00000435823 C11orf86A6NJI1 115 aa7.16□□□□□ -1.26
COL28A1-203ENST00000435823 LEPROTL1O95214 131 aa7.16□□□□□ -1.26
COL28A1-203ENST00000435823 FLG2Q5D862 2391 aaPredicted RBP7.16□□□□□ -1.26
COL28A1-203ENST00000435823 IGLV5-39A0A0G2JS06 123 aa7.15□□□□□ -1.26
COL28A1-203ENST00000435823 LINC00310P59036 64 aa7.15□□□□□ -1.26
COL28A1-203ENST00000435823 PRR3P79522 188 aaKnown RBP7.15□□□□□ -1.26
COL28A1-203ENST00000435823 FAM19A5Q7Z5A7 132 aaPredicted RBP7.15□□□□□ -1.26
COL28A1-203ENST00000435823 HSPB8Q9UJY1 196 aa7.15□□□□□ -1.26
COL28A1-203ENST00000435823 FAM168BA1KXE4 195 aa7.14□□□□□ -1.27
COL28A1-203ENST00000435823 PHF5AQ7RTV0 110 aaKnown RBP7.14□□□□□ -1.27
COL28A1-203ENST00000435823 H0Y8G0 127 aa7.13□□□□□ -1.27
COL28A1-203ENST00000435823 HNRNPA3P51991 378 aaKnown RBP7.13□□□□□ -1.27
COL28A1-203ENST00000435823 C9orf129Q5T035 196 aaKnown RBP7.13□□□□□ -1.27
COL28A1-203ENST00000435823 SFTA2Q6UW10 78 aa7.13□□□□□ -1.27
COL28A1-203ENST00000435823 NUPR1O60356 82 aa7.12□□□□□ -1.27
COL28A1-203ENST00000435823 FABP4P15090 132 aa7.12□□□□□ -1.27
COL28A1-203ENST00000435823 XAGE1AQ9HD64 81 aa7.12□□□□□ -1.27
COL28A1-203ENST00000435823 TMEM223A0PJW6 202 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 KRTAP29-1A8MX34 341 aaPredicted RBP7.11□□□□□ -1.27
COL28A1-203ENST00000435823 M0QXV9 152 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BKO60814 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BJP06899 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BOP23527 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BBP33778 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BDP58876 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BCP62807 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST2H2BEQ16778 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BHQ93079 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BNQ99877 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 HIST1H2BMQ99879 126 aa7.11□□□□□ -1.27
COL28A1-203ENST00000435823 PKHD1L1Q86WI1 4243 aa7.1□□□□□ -1.27
COL28A1-203ENST00000435823 OXTP01178 125 aa7.1□□□□□ -1.27
COL28A1-203ENST00000435823 UBE2BP63146 152 aa7.1□□□□□ -1.27
COL28A1-203ENST00000435823 ODF1Q14990 250 aa7.1□□□□□ -1.27
COL28A1-203ENST00000435823 MYCBP2O75592 4640 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 S100A1P23297 94 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 PLNP26678 52 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 PFN2P35080 140 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 SPINK6Q6UWN8 80 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 MAP1LC3CQ9BXW4 147 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 PSORS1C2Q9UIG4 136 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms