RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 ATP6V1G2-DDX39BF2Z307 99 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 CCDC179H3BU77 68 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 PITX3O75364 302 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 IGKV2D-40P01614 121 aaPredicted RBP1.45□□□□□ -2.18
USP40-204ENST00000427947 PIRTP0C851 137 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 FGF7P21781 194 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 S100A7L2Q5SY68 101 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 GDF5OSQ5U4N7 250 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 RPL7L1Q6DKI1 246 aaKnown RBP1.45□□□□□ -2.18
USP40-204ENST00000427947 LYPD5Q6UWN5 251 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 C12orf57Q99622 126 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 MRPL36Q9P0J6 103 aaKnown RBP1.45□□□□□ -2.18
USP40-204ENST00000427947 Q9Y3F1 56 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 ZNF236Q9UL36 1845 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 ANK1P16157 1881 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 PDCD11Q14690 1871 aaKnown RBP1.44□□□□□ -2.18
USP40-204ENST00000427947 IGKV3-7A0A075B6H7 116 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 A0A0D9SFI3 127 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 A6NIN4 97 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 LOC730098B7Z3J9 87 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 INE1O15225 51 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 PIPP12273 146 aaPredicted RBP1.44□□□□□ -2.18
USP40-204ENST00000427947 PP6455Q8WZ26 134 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 OBSCN-AS1Q96MR7 158 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 TCEAL7Q9BRU2 100 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 SNRNP25Q9BV90 132 aaKnown RBP1.44□□□□□ -2.18
USP40-204ENST00000427947 RERGLQ9H628 205 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 NDUFA12Q9UI09 145 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 SIP14410 1827 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 FANCMQ8IYD8 2048 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 SCN3AQ9NY46 2000 aa1.44□□□□□ -2.18
USP40-204ENST00000427947 PCDH15Q96QU1 1955 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 MDC1Q14676 2089 aaKnown RBP1.43□□□□□ -2.18
USP40-204ENST00000427947 HELZP42694 1942 aaKnown RBP1.43□□□□□ -2.18
USP40-204ENST00000427947 LOC110117498A0A087WWA1 95 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 IGKV2-29A2NJV5 120 aaPredicted RBP1.43□□□□□ -2.18
USP40-204ENST00000427947 CORTO00230 105 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 IGLV3-1P01715 115 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 GYPBP06028 91 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 SLC25A6P12236 298 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 CD52P31358 61 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 SPATA45Q537H7 98 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 SPANXN1Q5VSR9 72 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 UNQ6190/PRO20217Q6UXQ8 127 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 PPDPFLQ8WWR9 84 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 AGPAT4-IT1Q9H0P7 198 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 ATG5Q9H1Y0 275 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 NAA60Q9H7X0 242 aa1.43□□□□□ -2.18
USP40-204ENST00000427947 DOCK10Q96BY6 2186 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 APOBP04114 4563 aaKnown RBP1.42□□□□□ -2.18
USP40-204ENST00000427947 DIDO1Q9BTC0 2240 aaKnown RBP1.42□□□□□ -2.18
USP40-204ENST00000427947 KIAA1549Q9HCM3 1950 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 TRAV2A0A0B4J234 112 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 A0A0J9YY99 117 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 C20orf202A1L168 122 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 M0R2N4 97 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 NDUFB6O95139 128 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 GNG4P50150 75 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 TPPP2P59282 170 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 PTPRDP23468 1912 aa1.42□□□□□ -2.18
USP40-204ENST00000427947 MYO18AQ92614 2054 aaKnown RBP1.41□□□□□ -2.18
USP40-204ENST00000427947 TCRBV3S1A0A5B6 114 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 NUPR2A6NF83 97 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 MCRIP1C9JLW8 97 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 RPL37AP61513 92 aaKnown RBP1.41□□□□□ -2.18
USP40-204ENST00000427947 PPP3R1P63098 170 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 Q56UQ5 140 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 MRPL54Q6P161 138 aaKnown RBP1.41□□□□□ -2.18
USP40-204ENST00000427947 DMAC1Q96GE9 116 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 TMEM141Q96I45 108 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 MRPL57Q9BQC6 102 aaKnown RBP1.41□□□□□ -2.18
USP40-204ENST00000427947 SERP1Q9Y6X1 66 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 FREM1Q5H8C1 2179 aa1.41□□□□□ -2.18
USP40-204ENST00000427947 KIAA1549LQ6ZVL6 1849 aa1.4□□□□□ -2.18
USP40-204ENST00000427947 PKHD1L1Q86WI1 4243 aa1.4□□□□□ -2.18
USP40-204ENST00000427947 PLXNA4Q9HCM2 1894 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 TRBV10-1A0A0K0K1A3 114 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 APOC4-APOC2K7ER74 178 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 APOC2P02655 101 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 CCKP06307 115 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 PDE6GP18545 87 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 UBE2G1P62253 170 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 CATR1Q13166 79 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 SLC48A1Q6P1K1 146 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 GTF2H5Q6ZYL4 71 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 SPTSSBQ8NFR3 76 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 LSM10Q969L4 123 aaKnown RBP1.4□□□□□ -2.19
USP40-204ENST00000427947 CYSTM1Q9H1C7 97 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 MRPL35Q9NZE8 188 aaKnown RBP1.4□□□□□ -2.19
USP40-204ENST00000427947 MED12LQ86YW9 2145 aa1.4□□□□□ -2.19
USP40-204ENST00000427947 HEATR1Q9H583 2144 aaKnown RBP1.4□□□□□ -2.19
USP40-204ENST00000427947 URB1O60287 2271 aaKnown RBP1.4□□□□□ -2.19
USP40-204ENST00000427947 AKAP6Q13023 2319 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 FREM3P0C091 2139 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 ATG2AQ2TAZ0 1938 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 PATJQ8NI35 1801 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 FXYD4P59646 89 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 BTG2P78543 158 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 C9orf153Q5TBE3 101 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 C10orf105Q8TEF2 133 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms