RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 Q6ZQT0 140 aa5.6□□□□□ -1.51
HMGXB4-202ENST00000418170 TRAV10A0A0B4J240 114 aa5.59□□□□□ -1.51
HMGXB4-202ENST00000418170 NDUFC1O43677 76 aa5.59□□□□□ -1.51
HMGXB4-202ENST00000418170 TRBV7-6A0A0J9YX20 115 aa5.59□□□□□ -1.51
HMGXB4-202ENST00000418170 LOC110117498A0A087WWA1 95 aa5.59□□□□□ -1.52
HMGXB4-202ENST00000418170 ATP5EP56381 51 aaPredicted RBP5.59□□□□□ -1.52
HMGXB4-202ENST00000418170 MAP6D1Q9H9H5 199 aa5.59□□□□□ -1.52
HMGXB4-202ENST00000418170 IGKV3OR2-268A0A0C4DH90 116 aa5.58□□□□□ -1.52
HMGXB4-202ENST00000418170 LINC00474Q9P2X8 69 aa5.58□□□□□ -1.52
HMGXB4-202ENST00000418170 IGHV4-61A0A0C4DH41 118 aa5.58□□□□□ -1.52
HMGXB4-202ENST00000418170 RBM3P98179 157 aaKnown RBP5.58□□□□□ -1.52
HMGXB4-202ENST00000418170 CMYA5Q8N3K9 4069 aa5.58□□□□□ -1.52
HMGXB4-202ENST00000418170 A0A1W2PRX2 142 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 Q6ZVQ6 151 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 IGLV4-60A0A075B6I1 120 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 CXCL6P80162 114 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 UBE2E2Q96LR5 201 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 RNASE1P07998 156 aaKnown RBP5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 HAMPP81172 84 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 C2CD3Q4AC94 2353 aa5.57□□□□□ -1.52
HMGXB4-202ENST00000418170 C6orf226Q5I0X4 101 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 TRBV7-4A0A0J9YYF1 115 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 C1orf158Q8N1D5 194 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 C19orf84I3L1E1 186 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 ZNF561-AS1K7EIQ3 104 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 SLURP1P55000 103 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 PRR3P79522 188 aaKnown RBP5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 C11orf68Q9H3H3 251 aaKnown RBP5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 M0R2N4 97 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 IGHV4-59P01825 116 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 C6orf223Q8N319 242 aa5.56□□□□□ -1.52
HMGXB4-202ENST00000418170 Q8N3U1 123 aa5.55□□□□□ -1.52
HMGXB4-202ENST00000418170 C11orf44Q8N8P7 122 aa5.55□□□□□ -1.52
HMGXB4-202ENST00000418170 TM2D3Q9BRN9 247 aa5.55□□□□□ -1.52
HMGXB4-202ENST00000418170 MIFP14174 115 aa5.55□□□□□ -1.52
HMGXB4-202ENST00000418170 NIPBLQ6KC79 2804 aaeCLIP5.55□□□□□ -1.525e-6■□□□□ 10.2
HMGXB4-202ENST00000418170 C6orf99Q4VX62 202 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 C1orf195Q5TG92 126 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 LINC00575Q6W349 94 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 LOC100131303A0A0U1RQF7 123 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 V9GYY9 64 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 CSPG4Q6UVK1 2322 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 MSMBP08118 114 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 DEFB136Q30KP8 78 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 Q8IZM0 81 aa5.54□□□□□ -1.52
HMGXB4-202ENST00000418170 LINC00959A0A1B0GUT2 108 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 C9orf66Q5T8R8 295 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 ANK2Q01484 3957 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 TRBV6-8A0A0A6YYG3 113 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 LAMTOR3Q9UHA4 124 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 CR1P17927 2039 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 PDE6GP18545 87 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 TEX15Q9BXT5 2789 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 CHD6Q8TD26 2715 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 A0A0U1RQV1 116 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 SEC61GP60059 68 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 DEFB112Q30KQ8 113 aa5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 BBC3Q96PG8 261 aaPredicted RBP5.53□□□□□ -1.52
HMGXB4-202ENST00000418170 NREPQ16612 68 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 C18orf65Q6ZTR6 163 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 TMEM254Q8TBM7 123 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 NOP10Q9NPE3 64 aaKnown RBP5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 DOPEY1Q5JWR5 2465 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 ERC2-IT1O76042 136 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 FAM229BQ4G0N7 80 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 DYNLRB2Q8TF09 96 aa5.52□□□□□ -1.53
HMGXB4-202ENST00000418170 COX17Q14061 63 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 ZNF843Q8N446 348 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 DEFB114Q30KQ6 69 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 ODF3L2Q3SX64 289 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 STHQ8IWL8 128 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 NF1P21359 2839 aa5.51□□□□□ -1.53
HMGXB4-202ENST00000418170 ZFYVE26Q68DK2 2539 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 TRGV2A0A075B6R0 118 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 OTOGQ6ZRI0 2925 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 MUC7Q8TAX7 377 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 ZNF702PQ9H963 129 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 NOTCH3Q9UM47 2321 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 IGHV4-30-2A0A087WSY4 118 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 Q8NDZ9 215 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 MPLKIPQ8TAP9 179 aa5.5□□□□□ -1.53
HMGXB4-202ENST00000418170 H3BQ85 93 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 TRGV4A0A0C4DH28 118 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 PLAC8L1A1L4L8 177 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 BPY2O14599 106 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 SCXQ7RTU7 201 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 SPATA3Q8NHX4 192 aa5.49□□□□□ -1.53
HMGXB4-202ENST00000418170 ESRGQ1W209 222 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 B4DSR2 109 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 KIAA0087Q14695 138 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 KHDC1LQ5JSQ8 128 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 Q6ZQY7 126 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 IGHV4-28A0A0C4DH34 117 aa5.48□□□□□ -1.53
HMGXB4-202ENST00000418170 PRYO14603 147 aa5.47□□□□□ -1.53
HMGXB4-202ENST00000418170 C16orf74Q96GX8 76 aa5.47□□□□□ -1.53
HMGXB4-202ENST00000418170 GNLYP22749 145 aa5.47□□□□□ -1.53
HMGXB4-202ENST00000418170 ACACBO00763 2458 aa5.47□□□□□ -1.53
HMGXB4-202ENST00000418170 GCN1Q92616 2671 aaKnown RBP5.47□□□□□ -1.53
HMGXB4-202ENST00000418170 PLA2G2AP14555 144 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 318 ms