RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TIRAPP58753 221 aa8.02□□□□□ -1.13
PTPRF-204ENST00000412568 LINC00315P59091 139 aa8.02□□□□□ -1.13
PTPRF-204ENST00000412568 KPRPQ5T749 579 aaPredicted RBP8.02□□□□□ -1.13
PTPRF-204ENST00000412568 Q8N2B8 174 aa8.02□□□□□ -1.13
PTPRF-204ENST00000412568 IGLV4-60A0A075B6I1 120 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 SLPIP03973 132 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 LINC00308Q8TCZ7 52 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 TRBV30A0A0K0K1B3 111 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 NDUFA1O15239 70 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 MRPS36P82909 103 aaKnown RBP8.01□□□□□ -1.13
PTPRF-204ENST00000412568 POM121L12Q8N7R1 296 aa8.01□□□□□ -1.13
PTPRF-204ENST00000412568 JMJD7-PLA2G4BH0Y9G9 81 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 A0A096LNT2 108 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 A0A0J9YWU9 116 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 RMI2Q96E14 147 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 FSHBP01225 129 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 FAM19A4Q96LR4 140 aa8□□□□□ -1.13
PTPRF-204ENST00000412568 UBE2D1P51668 147 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 LINC00242Q5T6M2 205 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 CHCHD7Q9BUK0 85 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 CDC42SE2Q9NRR3 84 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 CRYBG3Q68DQ2 2970 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 IGKV2-24A0A0C4DH68 120 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 COX6A2Q02221 97 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 UBE2BP63146 152 aa7.99□□□□□ -1.13
PTPRF-204ENST00000412568 KIR2DL5BQ8NHK3 375 aa7.98□□□□□ -1.13
PTPRF-204ENST00000412568 LINC00959A0A1B0GUT2 108 aa7.98□□□□□ -1.13
PTPRF-204ENST00000412568 FHL2Q14192 279 aa7.98□□□□□ -1.13
PTPRF-204ENST00000412568 ASH1LQ9NR48 2969 aaKnown RBP7.98□□□□□ -1.13
PTPRF-204ENST00000412568 NREPQ16612 68 aa7.97□□□□□ -1.13
PTPRF-204ENST00000412568 Q6ZTC4 211 aa7.97□□□□□ -1.13
PTPRF-204ENST00000412568 UTP20O75691 2785 aaKnown RBP7.97□□□□□ -1.13
PTPRF-204ENST00000412568 CDK2AP2O75956 126 aa7.97□□□□□ -1.13
PTPRF-204ENST00000412568 KLK9Q2XQG4 91 aa7.97□□□□□ -1.13
PTPRF-204ENST00000412568 C11orf72Q8NBR9 251 aa7.97□□□□□ -1.13
PTPRF-204ENST00000412568 C3orf22Q8N5N4 141 aa7.96□□□□□ -1.13
PTPRF-204ENST00000412568 C5orf47Q569G3 176 aa7.96□□□□□ -1.14
PTPRF-204ENST00000412568 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.95□□□□□ -1.14
PTPRF-204ENST00000412568 LINC01546A6NGU7 62 aa7.95□□□□□ -1.14
PTPRF-204ENST00000412568 TMEM256-PLSCR3K7ERE1 68 aa7.95□□□□□ -1.14
PTPRF-204ENST00000412568 LST1O00453 97 aa7.95□□□□□ -1.14
PTPRF-204ENST00000412568 FHL3Q13643 280 aa7.95□□□□□ -1.14
PTPRF-204ENST00000412568 BEAN1Q3B7T3 259 aa7.95□□□□□ -1.14
PTPRF-204ENST00000412568 FUSP35637 526 aaKnown RBP eCLIP7.94□□□□□ -1.14
PTPRF-204ENST00000412568 ADAMTSL4-AS1Q5T5F5 129 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 AMELXQ99217 191 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 H7C423 109 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 C9orf116Q5BN46 136 aaPredicted RBP7.94□□□□□ -1.14
PTPRF-204ENST00000412568 SCXQ7RTU7 201 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 ZFHX4Q86UP3 3567 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 UPK3BQ9BT76 320 aa7.94□□□□□ -1.14
PTPRF-204ENST00000412568 ENHOQ6UWT2 76 aa7.93□□□□□ -1.14
PTPRF-204ENST00000412568 BRK1Q8WUW1 75 aa7.93□□□□□ -1.14
PTPRF-204ENST00000412568 ETDCA0A1B0GVM5 59 aa7.92□□□□□ -1.14
PTPRF-204ENST00000412568 CXCL5P42830 114 aa7.92□□□□□ -1.14
PTPRF-204ENST00000412568 CELA1Q9UNI1 258 aa7.92□□□□□ -1.14
PTPRF-204ENST00000412568 M0R2N4 97 aa7.92□□□□□ -1.14
PTPRF-204ENST00000412568 SMIM1B2RUZ4 78 aa7.92□□□□□ -1.14
PTPRF-204ENST00000412568 IBA57-AS1B1ANH7 110 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 USP17L23D6RBM5 183 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 TIMM17BO60830 172 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 LELP1Q5T871 98 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 CD164L2Q6UWJ8 174 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 NTM-AS1Q6ZSK4 140 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 DIRC1Q969H9 104 aa7.91□□□□□ -1.14
PTPRF-204ENST00000412568 PRR3P79522 188 aaKnown RBP7.9□□□□□ -1.14
PTPRF-204ENST00000412568 KRTAP24-1Q3LI83 254 aa7.9□□□□□ -1.14
PTPRF-204ENST00000412568 KRTAP1-3Q8IUG1 177 aa7.9□□□□□ -1.14
PTPRF-204ENST00000412568 UNQ6190/PRO20217Q6UXQ8 127 aa7.9□□□□□ -1.14
PTPRF-204ENST00000412568 BAHCC1Q9P281 2608 aa7.9□□□□□ -1.15
PTPRF-204ENST00000412568 WFDC9Q8NEX5 89 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 MPLKIPQ8TAP9 179 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 TRAV10A0A0B4J240 114 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 C6orf99Q4VX62 202 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 FAM236DA0A1B0GTK5 79 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 FAM236CP0DP71 79 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 IMUPQ9GZP8 106 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 PKIGQ9Y2B9 76 aa7.89□□□□□ -1.15
PTPRF-204ENST00000412568 COX7CP15954 63 aa7.88□□□□□ -1.15
PTPRF-204ENST00000412568 SERP2Q8N6R1 65 aa7.88□□□□□ -1.15
PTPRF-204ENST00000412568 CYSRT1A8MQ03 144 aa7.88□□□□□ -1.15
PTPRF-204ENST00000412568 A0A0U1RQV1 116 aa7.87□□□□□ -1.15
PTPRF-204ENST00000412568 IGKV2-28A0A075B6P5 120 aa7.87□□□□□ -1.15
PTPRF-204ENST00000412568 IGKV2D-28P01615 120 aa7.87□□□□□ -1.15
PTPRF-204ENST00000412568 WFDC10BQ8IUB3 73 aa7.87□□□□□ -1.15
PTPRF-204ENST00000412568 KLK5Q9Y337 293 aaPredicted RBP7.87□□□□□ -1.15
PTPRF-204ENST00000412568 NDUFC2O95298 119 aa7.87□□□□□ -1.15
PTPRF-204ENST00000412568 Q8N3U1 123 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 CDIP1Q9H305 208 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 NF1P21359 2839 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 C6orf223Q8N319 242 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 DCHS2Q6V1P9 2916 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 M0QXV9 152 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 SYCNQ0VAF6 134 aa7.86□□□□□ -1.15
PTPRF-204ENST00000412568 NSD1Q96L73 2696 aaPredicted RBP7.86□□□□□ -1.15
PTPRF-204ENST00000412568 A0A096LNI7 61 aa7.85□□□□□ -1.15
PTPRF-204ENST00000412568 SMIM11BQ8TCY0 68 aa7.85□□□□□ -1.15
PTPRF-204ENST00000412568 SNURFQ9Y675 71 aa7.85□□□□□ -1.15
PTPRF-204ENST00000412568 A0A087WVE0 104 aa7.85□□□□□ -1.15
PTPRF-204ENST00000412568 BPY2O14599 106 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms