RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 C6orf223Q8N319 242 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 TOMM7Q9P0U1 55 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 PRO0255Q9UI72 69 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 ITPR1Q14643 2758 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 GVQW2A0A096LPI5 108 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 A0A0J9YWU9 116 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 IGHV4-30-4P0DP06 118 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 ATRXP46100 2492 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 IGF2RP11717 2491 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 TRBV7-6A0A0J9YX20 115 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 LINC00575Q6W349 94 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 MAPK1IP1LQ8NDC0 245 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 LINC01006Q8NI28 216 aa3.94□□□□□ -1.78
CCDC88A-203ENST00000412148 NCR3O14931 201 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 PLA2G2AP14555 144 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 EPM2AB3EWF7 344 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 PRYO14603 147 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 PFN2P35080 140 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 ESM1Q9NQ30 184 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 VPS13CQ709C8 3753 aa3.93□□□□□ -1.78
CCDC88A-203ENST00000412148 LOC107984640A0A0U1RRK4 108 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 IGLV6-57P01721 117 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 Q6ZQT0 140 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 CXCL6P80162 114 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 OR13C6PQ8NH95 151 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 DPH3Q96FX2 82 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 UBL5Q9BZL1 73 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 C5orf47Q569G3 176 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 CSPG4Q6UVK1 2322 aa3.92□□□□□ -1.78
CCDC88A-203ENST00000412148 ANKRD17O75179 2603 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 IGKV3D-7A0A0C4DH55 119 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 PRR34Q9NV39 138 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 CRYBG3Q68DQ2 2970 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 RPL35AP18077 110 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 KRTAP10-9P60411 292 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 KRTAP1-1Q07627 177 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 SVEP1Q4LDE5 3571 aa3.91□□□□□ -1.78
CCDC88A-203ENST00000412148 TRAV7A0A075B6U4 112 aa3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 XCL1P47992 114 aa3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 RBM3P98179 157 aaKnown RBP3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 FAM19A5Q7Z5A7 132 aaPredicted RBP3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 LINC00482Q8N8I6 264 aa3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 CHCHD10Q8WYQ3 142 aaPredicted RBP3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 NBASA2RRP1 2371 aa3.9□□□□□ -1.78
CCDC88A-203ENST00000412148 KLKP1Q107X0 134 aa3.9□□□□□ -1.79
CCDC88A-203ENST00000412148 SLPIP03973 132 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 HILS1P60008 231 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 REG3AQ06141 175 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 C6orf99Q4VX62 202 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 CYSTM1Q9H1C7 97 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 WFDC10AQ9H1F0 79 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 CELSR2Q9HCU4 2923 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 TRBV7-4A0A0J9YYF1 115 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 MXRA5Q9NR99 2828 aa3.89□□□□□ -1.79
CCDC88A-203ENST00000412148 A0A087WVE0 104 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 IGKV3OR2-268A0A0C4DH90 116 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 ERC2-IT1O76042 136 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 VPREB1P12018 145 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 LELP1Q5T871 98 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 LCE2AQ5TA79 106 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 A0A1B0GW54 56 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 LINC00269Q8N2A0 174 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 ZNF843Q8N446 348 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 C3orf56Q8N813 242 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 BBC3Q96PG8 261 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 H3BNG1 76 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 NDUFC1O43677 76 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 CELA1Q9UNI1 258 aa3.88□□□□□ -1.79
CCDC88A-203ENST00000412148 FBN2P35556 2912 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 MIFP14174 115 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 ATP5EP56381 51 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 LINC01547P58512 204 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 Q8NDZ9 215 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 UBR5O95071 2799 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 DEFB130BP0DP73 79 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 DEFB130AP0DP74 79 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 APOC4P55056 127 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 ELOF1P60002 83 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 Q6ZVQ6 151 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 DSCR8Q96T75 97 aa3.87□□□□□ -1.79
CCDC88A-203ENST00000412148 ENHOQ6UWT2 76 aa3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 UTP20O75691 2785 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 H7BZZ5 65 aa3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 SPAG11BQ08648 103 aa3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 DIRC1Q969H9 104 aa3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 SERP1Q9Y6X1 66 aa3.86□□□□□ -1.79
CCDC88A-203ENST00000412148 ANGP03950 147 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 PRR3P79522 188 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 FAM19A1Q7Z5A9 133 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 WFDC11Q8NEX6 87 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 TRAV23DV6A0A075B6W5 121 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 CYSRT1A8MQ03 144 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 Q5XG85 94 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 Q8NAQ8 132 aa3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 C11orf68Q9H3H3 251 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-203ENST00000412148 FAM236DA0A1B0GTK5 79 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 CACNA1AO00555 2505 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 OXTP01178 125 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 FAM236CP0DP71 79 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms