RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TP53TG3Q9ULZ0 132 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 KIAA1549Q9HCM3 1950 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 TRBV6-8A0A0A6YYG3 113 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 Q8N3U1 123 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 RNF185Q96GF1 192 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 TRBV6-5A0A0K0K1A5 114 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 CRIP2P52943 208 aaPredicted RBP5.27□□□□□ -1.57
SCN9A-202ENST00000409435 NBDYA0A0U1RRE5 68 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.26□□□□□ -1.57
SCN9A-202ENST00000409435 ZFAND2AQ8N6M9 145 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 IGKV1D-37A0A075B6S9 117 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 A0A096LNI7 61 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 EIF4EBP1Q13541 118 aaPredicted RBP5.26□□□□□ -1.57
SCN9A-202ENST00000409435 GDF5OSQ5U4N7 250 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 NTM-AS1Q6ZSK4 140 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 C1orf137Q5JT78 98 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 POLQO75417 2590 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 A0A1B0GU69 56 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 CHCHD7Q9BUK0 85 aa5.26□□□□□ -1.57
SCN9A-202ENST00000409435 H0Y9P7 68 aa5.25□□□□□ -1.57
SCN9A-202ENST00000409435 FAM167A-AS1Q96KT0 104 aa5.25□□□□□ -1.57
SCN9A-202ENST00000409435 EDN2P20800 178 aa5.25□□□□□ -1.57
SCN9A-202ENST00000409435 NCOA6Q14686 2063 aaPredicted RBP5.24□□□□□ -1.57
SCN9A-202ENST00000409435 CDKN2A-AS1Q9UH64 79 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 PATE2Q6UY27 113 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 XAGE1AQ9HD64 81 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 LINC01556Q5JQF7 62 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 EPM2AB3EWF7 344 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 PCOTHQ58A44 107 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 SMIM11BQ8TCY0 68 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 LINC00467Q9BRT7 94 aa5.24□□□□□ -1.57
SCN9A-202ENST00000409435 HCG22E2RYF7 251 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 SORL1Q92673 2214 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 BCE1O60756 84 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 MYO9AB2RTY4 2548 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 IGLV4-3A0A075B6K6 122 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 RPL37AP61513 92 aaKnown RBP5.23□□□□□ -1.57
SCN9A-202ENST00000409435 CD164L2Q6UWJ8 174 aa5.23□□□□□ -1.57
SCN9A-202ENST00000409435 SPINK6Q6UWN8 80 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 KRTAP21-3Q3LHN1 58 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 HECTD1Q9ULT8 2610 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 KRTAP10-11P60412 298 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 ATP11AUNQ6ZP68 121 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 DCANP1Q8TF63 244 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 DOPEY1Q5JWR5 2465 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 LINC01547P58512 204 aaPredicted RBP5.22□□□□□ -1.57
SCN9A-202ENST00000409435 LCA10Q71F78 164 aa5.22□□□□□ -1.57
SCN9A-202ENST00000409435 CPAMD8Q8IZJ3 1885 aa5.21□□□□□ -1.57
SCN9A-202ENST00000409435 M0R378 163 aa5.21□□□□□ -1.57
SCN9A-202ENST00000409435 RTL8CO15255 209 aa5.21□□□□□ -1.57
SCN9A-202ENST00000409435 Q6ZSN1 163 aa5.21□□□□□ -1.58
SCN9A-202ENST00000409435 LOC100131303A0A0U1RQF7 123 aa5.21□□□□□ -1.58
SCN9A-202ENST00000409435 LYPD5Q6UWN5 251 aa5.2□□□□□ -1.58
SCN9A-202ENST00000409435 CASC10Q5T4H9 136 aa5.2□□□□□ -1.58
SCN9A-202ENST00000409435 CDIP1Q9H305 208 aa5.2□□□□□ -1.58
SCN9A-202ENST00000409435 SPINK1P00995 79 aa5.2□□□□□ -1.58
SCN9A-202ENST00000409435 KTN1-AS1Q86SY8 53 aa5.2□□□□□ -1.58
SCN9A-202ENST00000409435 Q6ZPA2 131 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 X6R8D5 127 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 C7orf65Q6ZTY9 151 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 LINC00315P59091 139 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 C10orf25Q5T742 122 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 CYP4F30PQ9H0H9 118 aa5.19□□□□□ -1.58
SCN9A-202ENST00000409435 KRTAP1-3Q8IUG1 177 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 IGLV9-49A0A0B4J1Y8 123 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 IGLV2-14P01704 120 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 COX17Q14061 63 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 Q8N814 137 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 CIRBP-AS1Q8TBR5 109 aa5.18□□□□□ -1.58
SCN9A-202ENST00000409435 ANKRD17O75179 2603 aaKnown RBP5.18□□□□□ -1.58
SCN9A-202ENST00000409435 C1orf64Q8NEQ6 169 aa5.17□□□□□ -1.58
SCN9A-202ENST00000409435 ZNF80P51504 273 aaPredicted RBP5.17□□□□□ -1.58
SCN9A-202ENST00000409435 SSBP3-AS1Q7Z2R9 100 aa5.17□□□□□ -1.58
SCN9A-202ENST00000409435 USP9XQ93008 2570 aaPredicted RBP5.17□□□□□ -1.58
SCN9A-202ENST00000409435 ARHGAP32A7KAX9 2087 aa5.16□□□□□ -1.58
SCN9A-202ENST00000409435 ACYP2P14621 99 aa5.16□□□□□ -1.58
SCN9A-202ENST00000409435 FN1P02751 2386 aaKnown RBP5.16□□□□□ -1.58
SCN9A-202ENST00000409435 COX6A2Q02221 97 aa5.15□□□□□ -1.58
SCN9A-202ENST00000409435 H3BS24 57 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 EGFEM1PQ0D2K5 195 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 IGKV2-28A0A075B6P5 120 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 IGKV2D-28P01615 120 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 KRTAP1-1Q07627 177 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 LINC00846Q9NV44 126 aa5.15□□□□□ -1.59
SCN9A-202ENST00000409435 A0A096LNT2 108 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 FHL2Q14192 279 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 LINC00476Q8WZB0 136 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 LINC00575Q6W349 94 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 TM2D3Q9BRN9 247 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 EXPH5Q8NEV8 1989 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 H3BNG1 76 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 BAHCC1Q9P281 2608 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 PRLHP81277 87 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 IGHV6-1A0A0B4J1U7 121 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 H3BPC8 53 aa5.14□□□□□ -1.59
SCN9A-202ENST00000409435 RPL37AP8A6NKH3 93 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 C11orf1Q9H5F2 150 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 WIPF1O43516 503 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 LINC01561Q8N1V8 128 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 Q9UF83 564 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms