RNA–Protein interactions for RNA: ENST00000409323.1

CHRNA1-204, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 1 (best) BASIC

Gene CHRNA1, Length 1,585 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-204ENST00000409323 TMEM223A0PJW6 202 aa9.2□□□□□ -0.94
CHRNA1-204ENST00000409323 ZNF561-AS1K7EIQ3 104 aa9.2□□□□□ -0.94
CHRNA1-204ENST00000409323 C2orf82Q6UX34 121 aa9.2□□□□□ -0.94
CHRNA1-204ENST00000409323 FAT2Q9NYQ8 4349 aa9.19□□□□□ -0.94
CHRNA1-204ENST00000409323 A0A1B0GVY2 172 aa9.19□□□□□ -0.94
CHRNA1-204ENST00000409323 KIAA0087Q14695 138 aa9.18□□□□□ -0.94
CHRNA1-204ENST00000409323 C14orf177Q52M58 125 aa9.18□□□□□ -0.94
CHRNA1-204ENST00000409323 PCP2Q8IVA1 136 aa9.18□□□□□ -0.94
CHRNA1-204ENST00000409323 PRSS2P07478 247 aa9.17□□□□□ -0.94
CHRNA1-204ENST00000409323 C10orf25Q5T742 122 aa9.17□□□□□ -0.94
CHRNA1-204ENST00000409323 COX7B2Q8TF08 81 aa9.17□□□□□ -0.94
CHRNA1-204ENST00000409323 CAMK2N2Q96S95 79 aa9.17□□□□□ -0.94
CHRNA1-204ENST00000409323 IGLV5-52A0A0A0MRZ9 124 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 C6orf226Q5I0X4 101 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 UNQ6190/PRO20217Q6UXQ8 127 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 Q6ZRU5 148 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 C2orf91Q6ZV80 131 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 LINC01561Q8N1V8 128 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 IGLV5-39A0A0G2JS06 123 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 NMUP48645 174 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 HNRNPA3P51991 378 aaKnown RBP9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 TSPEAR-AS2P59090 65 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 HERVK_113P61574 105 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 HIGD1BQ9P298 99 aa9.16□□□□□ -0.94
CHRNA1-204ENST00000409323 Q8IZM0 81 aa9.15□□□□□ -0.95
CHRNA1-204ENST00000409323 CKS1BP61024 79 aa9.14□□□□□ -0.95
CHRNA1-204ENST00000409323 SYCNQ0VAF6 134 aa9.14□□□□□ -0.95
CHRNA1-204ENST00000409323 C9orf116Q5BN46 136 aaPredicted RBP9.14□□□□□ -0.95
CHRNA1-204ENST00000409323 CARD19Q96LW7 228 aa9.14□□□□□ -0.95
CHRNA1-204ENST00000409323 LEPROTO15243 131 aa9.13□□□□□ -0.95
CHRNA1-204ENST00000409323 ZNF625Q96I27 306 aaPredicted RBP9.13□□□□□ -0.95
CHRNA1-204ENST00000409323 MYMXA0A1B0GTQ4 84 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 NDUFA1O15239 70 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 LBHQ53QV2 105 aaPredicted RBP9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 SNHG12Q9BXW3 62 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 TTTY13Q9BZ97 58 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 TP73-AS1Q9UF72 201 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 M0R143 59 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 CNBPP62633 177 aaKnown RBP9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 C2orf48Q96LS8 159 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 C6orf48Q9UBA6 75 aa9.12□□□□□ -0.95
CHRNA1-204ENST00000409323 PKD1P98161 4303 aa9.11□□□□□ -0.95
CHRNA1-204ENST00000409323 J3QQQ9 107 aa9.11□□□□□ -0.95
CHRNA1-204ENST00000409323 PLEKHB2Q96CS7 222 aa9.11□□□□□ -0.95
CHRNA1-204ENST00000409323 DNAH11Q96DT5 4516 aa9.1□□□□□ -0.95
CHRNA1-204ENST00000409323 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.1□□□□□ -0.95
CHRNA1-204ENST00000409323 C16orf90A8MZG2 172 aa9.1□□□□□ -0.95
CHRNA1-204ENST00000409323 PGPEP1Q9NXJ5 209 aa9.1□□□□□ -0.95
CHRNA1-204ENST00000409323 LGALS3P17931 250 aaKnown RBP9.09□□□□□ -0.95
CHRNA1-204ENST00000409323 KRTAP10-1P60331 282 aa9.09□□□□□ -0.95
CHRNA1-204ENST00000409323 C9orf163Q8N9P6 203 aa9.09□□□□□ -0.95
CHRNA1-204ENST00000409323 NDUFA12Q9UI09 145 aa9.08□□□□□ -0.96
CHRNA1-204ENST00000409323 A0A0U1RRA0 63 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 CHTF8P0CG12 524 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 GCSHP23434 173 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 IGKV2-24A0A0C4DH68 120 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 ZNF815PA8K554 130 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 CXCL5P42830 114 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 HAMPP81172 84 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 RPL18AQ02543 176 aaKnown RBP9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 TAL2Q16559 108 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 BVES-AS1Q5T3Y7 98 aa9.07□□□□□ -0.96
CHRNA1-204ENST00000409323 PFN2P35080 140 aa9.06□□□□□ -0.96
CHRNA1-204ENST00000409323 HSD52Q0P140 79 aa9.06□□□□□ -0.96
CHRNA1-204ENST00000409323 GAGE2BQ13066 116 aa9.06□□□□□ -0.96
CHRNA1-204ENST00000409323 PANO1I0J062 215 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 GAGE2EQ4V326 116 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 SDIM1Q6ZPB5 146 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 FAM30AQ9NZY2 134 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 GAGE2DQ9UEU5 116 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 PKHD1P08F94 4074 aa9.05□□□□□ -0.96
CHRNA1-204ENST00000409323 A0A096LNI7 61 aa9.04□□□□□ -0.96
CHRNA1-204ENST00000409323 TRBV30A0A0K0K1B3 111 aa9.04□□□□□ -0.96
CHRNA1-204ENST00000409323 SPANXB1Q9NS25 103 aaPredicted RBP9.04□□□□□ -0.96
CHRNA1-204ENST00000409323 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
CHRNA1-204ENST00000409323 F8WDY8 70 aa9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 Q6ZRP5 223 aa9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 HINT1P49773 126 aaPredicted RBP9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 MEIG1Q5JSS6 88 aa9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 ERG28Q9UKR5 140 aa9.03□□□□□ -0.96
CHRNA1-204ENST00000409323 DNAH5Q8TE73 4624 aa9.02□□□□□ -0.97
CHRNA1-204ENST00000409323 LOC107984640A0A0U1RRK4 108 aa9.02□□□□□ -0.97
CHRNA1-204ENST00000409323 SMIM13P0DJ93 91 aa9.02□□□□□ -0.97
CHRNA1-204ENST00000409323 LINC00158P58513 81 aa9.01□□□□□ -0.97
CHRNA1-204ENST00000409323 RNF151Q2KHN1 245 aa9.01□□□□□ -0.97
CHRNA1-204ENST00000409323 DAND5Q8N907 189 aa9.01□□□□□ -0.97
CHRNA1-204ENST00000409323 LITAFQ99732 161 aa9.01□□□□□ -0.97
CHRNA1-204ENST00000409323 XAGE1AQ9HD64 81 aa9.01□□□□□ -0.97
CHRNA1-204ENST00000409323 A0A0J9YXY3 114 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 NDUFC2-KCTD14E9PQ53 114 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 TIMM17BO60830 172 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 COL5A1-AS1Q5SY13 56 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 CEND1Q8N111 149 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 DPH3Q96FX2 82 aa9□□□□□ -0.97
CHRNA1-204ENST00000409323 EPPK1P58107 5090 aaKnown RBP9□□□□□ -0.97
CHRNA1-204ENST00000409323 PTTG1IPP53801 180 aa8.99□□□□□ -0.97
CHRNA1-204ENST00000409323 HERV-K104P63124 156 aa8.99□□□□□ -0.97
CHRNA1-204ENST00000409323 SCGB1D4Q6XE38 83 aa8.99□□□□□ -0.97
CHRNA1-204ENST00000409323 Q6ZVH6 145 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms