RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SYCNQ0VAF6 134 aa10.29□□□□□ -0.76
HMGA1-204ENST00000401473 C6orf226Q5I0X4 101 aa10.29□□□□□ -0.76
HMGA1-204ENST00000401473 CAMK2N2Q96S95 79 aa10.29□□□□□ -0.76
HMGA1-204ENST00000401473 GCSHP23434 173 aa10.28□□□□□ -0.76
HMGA1-204ENST00000401473 KRTAP10-1P60331 282 aa10.28□□□□□ -0.76
HMGA1-204ENST00000401473 COX7B2Q8TF08 81 aa10.27□□□□□ -0.76
HMGA1-204ENST00000401473 APOBP04114 4563 aaKnown RBP10.27□□□□□ -0.76
HMGA1-204ENST00000401473 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.27□□□□□ -0.77
HMGA1-204ENST00000401473 PRSS2P07478 247 aa10.27□□□□□ -0.77
HMGA1-204ENST00000401473 SDIM1Q6ZPB5 146 aa10.27□□□□□ -0.77
HMGA1-204ENST00000401473 C12orf57Q99622 126 aa10.27□□□□□ -0.77
HMGA1-204ENST00000401473 CARD19Q96LW7 228 aa10.26□□□□□ -0.77
HMGA1-204ENST00000401473 NDUFA1O15239 70 aa10.25□□□□□ -0.77
HMGA1-204ENST00000401473 CKS1BP61024 79 aa10.25□□□□□ -0.77
HMGA1-204ENST00000401473 STPG4Q8N801 248 aa10.25□□□□□ -0.77
HMGA1-204ENST00000401473 C6orf48Q9UBA6 75 aa10.25□□□□□ -0.77
HMGA1-204ENST00000401473 SMIM6P0DI80 62 aa10.24□□□□□ -0.77
HMGA1-204ENST00000401473 ATOH7Q8N100 152 aa10.24□□□□□ -0.77
HMGA1-204ENST00000401473 FAM30AQ9NZY2 134 aa10.24□□□□□ -0.77
HMGA1-204ENST00000401473 F8WDY8 70 aa10.23□□□□□ -0.77
HMGA1-204ENST00000401473 C9orf116Q5BN46 136 aaPredicted RBP10.23□□□□□ -0.77
HMGA1-204ENST00000401473 RYR1P21817 5038 aa10.22□□□□□ -0.77
HMGA1-204ENST00000401473 HSPG2P98160 4391 aa10.22□□□□□ -0.77
HMGA1-204ENST00000401473 C20orf202A1L168 122 aa10.21□□□□□ -0.77
HMGA1-204ENST00000401473 PANO1I0J062 215 aa10.21□□□□□ -0.77
HMGA1-204ENST00000401473 TSPEAR-AS2P59090 65 aa10.21□□□□□ -0.77
HMGA1-204ENST00000401473 RNF151Q2KHN1 245 aa10.21□□□□□ -0.78
HMGA1-204ENST00000401473 CXCL5P42830 114 aa10.2□□□□□ -0.78
HMGA1-204ENST00000401473 ZNF625Q96I27 306 aaPredicted RBP10.2□□□□□ -0.78
HMGA1-204ENST00000401473 TRBV30A0A0K0K1B3 111 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 LEPROTO15243 131 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 Q6ZSA8 131 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 E9PLD3 99 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 CHTF8P0CG12 524 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 MAJINQ3KP22 176 aa10.19□□□□□ -0.78
HMGA1-204ENST00000401473 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.19□□□□□ -0.78
HMGA1-204ENST00000401473 IGKV2D-26A0A0A0MRZ7 120 aa10.18□□□□□ -0.78
HMGA1-204ENST00000401473 J3QQQ9 107 aa10.18□□□□□ -0.78
HMGA1-204ENST00000401473 HERVK_113P61574 105 aa10.18□□□□□ -0.78
HMGA1-204ENST00000401473 Q6ZRP5 223 aa10.18□□□□□ -0.78
HMGA1-204ENST00000401473 A0A096LNI7 61 aa10.17□□□□□ -0.78
HMGA1-204ENST00000401473 SCGB1D1O95968 90 aa10.17□□□□□ -0.78
HMGA1-204ENST00000401473 PCP4L1A6NKN8 68 aa10.17□□□□□ -0.78
HMGA1-204ENST00000401473 CTAG1AP78358 180 aa10.17□□□□□ -0.78
HMGA1-204ENST00000401473 TLX1NBP0CAT3 122 aa10.16□□□□□ -0.78
HMGA1-204ENST00000401473 XGP55808 180 aa10.16□□□□□ -0.78
HMGA1-204ENST00000401473 HAMPP81172 84 aa10.16□□□□□ -0.78
HMGA1-204ENST00000401473 ANKRD39Q53RE8 183 aa10.16□□□□□ -0.78
HMGA1-204ENST00000401473 PLEKHB2Q96CS7 222 aa10.16□□□□□ -0.78
HMGA1-204ENST00000401473 IGKV2-24A0A0C4DH68 120 aa10.15□□□□□ -0.78
HMGA1-204ENST00000401473 LOC107984640A0A0U1RRK4 108 aa10.15□□□□□ -0.78
HMGA1-204ENST00000401473 PYY3Q5JQD4 70 aa10.15□□□□□ -0.78
HMGA1-204ENST00000401473 NDUFA12Q9UI09 145 aa10.15□□□□□ -0.78
HMGA1-204ENST00000401473 NDUFC2-KCTD14E9PQ53 114 aa10.15□□□□□ -0.79
HMGA1-204ENST00000401473 GAGE2BQ13066 116 aa10.15□□□□□ -0.79
HMGA1-204ENST00000401473 CIRBPQ14011 172 aaKnown RBP10.15□□□□□ -0.79
HMGA1-204ENST00000401473 TTTY13Q9BZ97 58 aa10.15□□□□□ -0.79
HMGA1-204ENST00000401473 HERC2O95714 4834 aa10.14□□□□□ -0.79
HMGA1-204ENST00000401473 PTTG1IPP53801 180 aa10.14□□□□□ -0.79
HMGA1-204ENST00000401473 RPL18AQ02543 176 aaKnown RBP10.14□□□□□ -0.79
HMGA1-204ENST00000401473 JOSD1Q15040 202 aaPredicted RBP10.14□□□□□ -0.79
HMGA1-204ENST00000401473 FAT1Q14517 4588 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 CDK2AP2O75956 126 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 LGALS3P17931 250 aaKnown RBP10.13□□□□□ -0.79
HMGA1-204ENST00000401473 PFN2P35080 140 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 GAGE2EQ4V326 116 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 SPACA4Q8TDM5 124 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 GAGE2DQ9UEU5 116 aa10.13□□□□□ -0.79
HMGA1-204ENST00000401473 SFTA2Q6UW10 78 aa10.12□□□□□ -0.79
HMGA1-204ENST00000401473 KRTAP17-1Q9BYP8 105 aa10.12□□□□□ -0.79
HMGA1-204ENST00000401473 ERG28Q9UKR5 140 aa10.12□□□□□ -0.79
HMGA1-204ENST00000401473 MYMXA0A1B0GTQ4 84 aa10.11□□□□□ -0.79
HMGA1-204ENST00000401473 CIRBP-AS1Q8TBR5 109 aa10.11□□□□□ -0.79
HMGA1-204ENST00000401473 S100A12P80511 92 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 SCXQ7RTU7 201 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 DPH3Q96FX2 82 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 VPS13BQ7Z7G8 4022 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 A0A087WYN8 130 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 A0A0U1RRA0 63 aa10.1□□□□□ -0.79
HMGA1-204ENST00000401473 C9orf129Q5T035 196 aaKnown RBP10.1□□□□□ -0.79
HMGA1-204ENST00000401473 NMUP48645 174 aa10.09□□□□□ -0.79
HMGA1-204ENST00000401473 HERV-K104P63124 156 aa10.09□□□□□ -0.79
HMGA1-204ENST00000401473 COX17Q14061 63 aa10.09□□□□□ -0.79
HMGA1-204ENST00000401473 PCP2Q8IVA1 136 aa10.09□□□□□ -0.79
HMGA1-204ENST00000401473 XAGE1AQ9HD64 81 aa10.09□□□□□ -0.79
HMGA1-204ENST00000401473 A0A1W2PNN7 141 aa10.08□□□□□ -0.8
HMGA1-204ENST00000401473 SMIM13P0DJ93 91 aa10.08□□□□□ -0.8
HMGA1-204ENST00000401473 LINC00474Q9P2X8 69 aa10.08□□□□□ -0.8
HMGA1-204ENST00000401473 PKIGQ9Y2B9 76 aa10.08□□□□□ -0.8
HMGA1-204ENST00000401473 FAM168BA1KXE4 195 aa10.07□□□□□ -0.8
HMGA1-204ENST00000401473 KRTAP7-1Q8IUC3 87 aa10.07□□□□□ -0.8
HMGA1-204ENST00000401473 A0A0J9YXY3 114 aa10.06□□□□□ -0.8
HMGA1-204ENST00000401473 ZNF815PA8K554 130 aa10.06□□□□□ -0.8
HMGA1-204ENST00000401473 LINC00158P58513 81 aa10.06□□□□□ -0.8
HMGA1-204ENST00000401473 MEIG1Q5JSS6 88 aa10.06□□□□□ -0.8
HMGA1-204ENST00000401473 HSBP1L1C9JCN9 74 aa10.06□□□□□ -0.8
HMGA1-204ENST00000401473 SND1-IT1Q9HBX3 110 aa10.05□□□□□ -0.8
HMGA1-204ENST00000401473 PLAC8Q9NZF1 115 aa10.05□□□□□ -0.8
HMGA1-204ENST00000401473 EPM2AB3EWF7 344 aa10.04□□□□□ -0.8
HMGA1-204ENST00000401473 ADAMTSL4-AS1Q5T5F5 129 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms