RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 UBE2D1P51668 147 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 AMMECR1LQ6DCA0 310 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 OR5A1Q8NGJ0 315 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 CDC42SE2Q9NRR3 84 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 IGLV5-45A0A087WSX0 123 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 EPM2AB3EWF7 344 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 USP17L23D6RBM5 183 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 HERVK_113P63121 156 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 KRTAP26-1Q6PEX3 210 aa9.53□□□□□ -0.88
SEC13-208ENST00000397109 A6NDN8 102 aa9.52□□□□□ -0.89
SEC13-208ENST00000397109 H3BRM9 83 aa9.52□□□□□ -0.89
SEC13-208ENST00000397109 Q6ZUT4 128 aa9.52□□□□□ -0.89
SEC13-208ENST00000397109 ORAOV1Q8WV07 137 aa9.52□□□□□ -0.89
SEC13-208ENST00000397109 GEMIN7Q9H840 131 aaKnown RBP9.52□□□□□ -0.89
SEC13-208ENST00000397109 IGLV10-54A0A075B6I4 117 aa9.51□□□□□ -0.89
SEC13-208ENST00000397109 J3QQQ9 107 aa9.51□□□□□ -0.89
SEC13-208ENST00000397109 Q6ZSA8 131 aa9.51□□□□□ -0.89
SEC13-208ENST00000397109 FAM30AQ9NZY2 134 aa9.51□□□□□ -0.89
SEC13-208ENST00000397109 ZNF815PA8K554 130 aa9.5□□□□□ -0.89
SEC13-208ENST00000397109 LGALS3P17931 250 aaKnown RBP9.5□□□□□ -0.89
SEC13-208ENST00000397109 TP73-AS1Q9UF72 201 aa9.5□□□□□ -0.89
SEC13-208ENST00000397109 DNAH8Q96JB1 4490 aa9.49□□□□□ -0.89
SEC13-208ENST00000397109 IGHV1-58A0A0C4DH39 117 aa9.49□□□□□ -0.89
SEC13-208ENST00000397109 A0A1B0GV90 55 aa9.49□□□□□ -0.89
SEC13-208ENST00000397109 CCL25O15444 150 aa9.49□□□□□ -0.89
SEC13-208ENST00000397109 ABCA13Q86UQ4 5058 aa9.49□□□□□ -0.89
SEC13-208ENST00000397109 TTTY13Q9BZ97 58 aa9.48□□□□□ -0.89
SEC13-208ENST00000397109 SPANXB1Q9NS25 103 aaPredicted RBP9.48□□□□□ -0.89
SEC13-208ENST00000397109 FAM229AH3BQW9 127 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 LINC01620Q4KN68 170 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 SCGB1D4Q6XE38 83 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 CEND1Q8N111 149 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 SMR3BP02814 79 aaPredicted RBP9.47□□□□□ -0.89
SEC13-208ENST00000397109 HAMPP81172 84 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 LINC00242Q5T6M2 205 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 Q5VSD8 79 aa9.47□□□□□ -0.89
SEC13-208ENST00000397109 IGKV3OR2-268A0A0C4DH90 116 aa9.46□□□□□ -0.9
SEC13-208ENST00000397109 CFAP161Q6P656 301 aa9.46□□□□□ -0.9
SEC13-208ENST00000397109 LINC00469Q8N7U9 141 aa9.46□□□□□ -0.9
SEC13-208ENST00000397109 HIST1H4GQ99525 98 aa9.46□□□□□ -0.9
SEC13-208ENST00000397109 RNASE13Q5GAN3 156 aaKnown RBP9.45□□□□□ -0.9
SEC13-208ENST00000397109 TMEM238LA0A1B0GVL6 79 aa9.44□□□□□ -0.9
SEC13-208ENST00000397109 GAGE12HA6NDE8 117 aa9.44□□□□□ -0.9
SEC13-208ENST00000397109 A6NJY4 79 aa9.44□□□□□ -0.9
SEC13-208ENST00000397109 C9orf163Q8N9P6 203 aa9.44□□□□□ -0.9
SEC13-208ENST00000397109 CHCHD10Q8WYQ3 142 aaPredicted RBP9.44□□□□□ -0.9
SEC13-208ENST00000397109 VPS13BQ7Z7G8 4022 aa9.44□□□□□ -0.9
SEC13-208ENST00000397109 IGLV5-39A0A0G2JS06 123 aa9.43□□□□□ -0.9
SEC13-208ENST00000397109 Q6ZVH6 145 aa9.43□□□□□ -0.9
SEC13-208ENST00000397109 CDKN2A-AS1Q9UH64 79 aa9.43□□□□□ -0.9
SEC13-208ENST00000397109 FAT1Q14517 4588 aa9.43□□□□□ -0.9
SEC13-208ENST00000397109 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.42□□□□□ -0.9
SEC13-208ENST00000397109 LINC00959A0A1B0GUT2 108 aa9.42□□□□□ -0.9
SEC13-208ENST00000397109 TAX1BP3O14907 124 aa9.42□□□□□ -0.9
SEC13-208ENST00000397109 SMIM13P0DJ93 91 aa9.42□□□□□ -0.9
SEC13-208ENST00000397109 PTTG1IPP53801 180 aa9.42□□□□□ -0.9
SEC13-208ENST00000397109 TSPEAR-AS2P59090 65 aa9.42□□□□□ -0.9
SEC13-208ENST00000397109 CNBPP62633 177 aaKnown RBP9.42□□□□□ -0.9
SEC13-208ENST00000397109 SRSF9Q13242 221 aaKnown RBP eCLIP9.42□□□□□ -0.9
SEC13-208ENST00000397109 TRAV13-1A0A0B4J241 112 aa9.41□□□□□ -0.9
SEC13-208ENST00000397109 TMEM238C9JI98 176 aa9.41□□□□□ -0.9
SEC13-208ENST00000397109 INAFM2P0DMQ5 153 aa9.41□□□□□ -0.9
SEC13-208ENST00000397109 SCXQ7RTU7 201 aa9.41□□□□□ -0.9
SEC13-208ENST00000397109 LINC01561Q8N1V8 128 aa9.41□□□□□ -0.9
SEC13-208ENST00000397109 TIMM17BO60830 172 aa9.4□□□□□ -0.9
SEC13-208ENST00000397109 COX6A2Q02221 97 aa9.4□□□□□ -0.9
SEC13-208ENST00000397109 SS18Q15532 418 aa9.4□□□□□ -0.9
SEC13-208ENST00000397109 NDUFA12Q9UI09 145 aa9.4□□□□□ -0.9
SEC13-208ENST00000397109 A0A1B0GWB2 263 aa9.4□□□□□ -0.91
SEC13-208ENST00000397109 FXYD2P54710 66 aa9.4□□□□□ -0.91
SEC13-208ENST00000397109 SFTA2Q6UW10 78 aa9.4□□□□□ -0.91
SEC13-208ENST00000397109 NDUFA1O15239 70 aa9.39□□□□□ -0.91
SEC13-208ENST00000397109 PLA2G1BP04054 148 aaKnown RBP9.39□□□□□ -0.91
SEC13-208ENST00000397109 SPINK8P0C7L1 97 aa9.39□□□□□ -0.91
SEC13-208ENST00000397109 XCL1P47992 114 aa9.39□□□□□ -0.91
SEC13-208ENST00000397109 FOXI1Q12951 378 aa9.39□□□□□ -0.91
SEC13-208ENST00000397109 C15orf56Q8N910 161 aa9.39□□□□□ -0.91
SEC13-208ENST00000397109 IGHV3-64A0A075B6Q5 118 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 IGHV3OR16-9A0A0B4J2B5 98 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 A0A0J9YXY3 114 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 C9orf118A6NHY6 69 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 SMIM1B2RUZ4 78 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 HERV-K104P63124 156 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 CIRBPQ14011 172 aaKnown RBP9.38□□□□□ -0.91
SEC13-208ENST00000397109 SDIM1Q6ZPB5 146 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 LINC00528Q8N1L1 170 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 CIRBP-AS1Q8TBR5 109 aa9.38□□□□□ -0.91
SEC13-208ENST00000397109 A0A087WZ39 114 aa9.37□□□□□ -0.91
SEC13-208ENST00000397109 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
SEC13-208ENST00000397109 GVQW2A0A096LPI5 108 aaPredicted RBP9.36□□□□□ -0.91
SEC13-208ENST00000397109 SLPIP03973 132 aa9.36□□□□□ -0.91
SEC13-208ENST00000397109 RPL24P83731 157 aaKnown RBP9.36□□□□□ -0.91
SEC13-208ENST00000397109 COPS9Q8WXC6 57 aa9.36□□□□□ -0.91
SEC13-208ENST00000397109 SPANXDQ9BXN6 97 aa9.36□□□□□ -0.91
SEC13-208ENST00000397109 PPDPFQ9H3Y8 114 aa9.36□□□□□ -0.91
SEC13-208ENST00000397109 SPANXCQ9NY87 97 aa9.36□□□□□ -0.91
SEC13-208ENST00000397109 SRRM2Q9UQ35 2752 aaKnown RBP9.36□□□□□ -0.91
SEC13-208ENST00000397109 IFITM1P13164 125 aa9.35□□□□□ -0.91
SEC13-208ENST00000397109 HIGD2BQ4VC39 106 aa9.35□□□□□ -0.91
SEC13-208ENST00000397109 NHP2Q9NX24 153 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms