RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 H3BMG7 143 aa6.96□□□□□ -1.3
VPS53-202ENST00000389040 EIF4EBP3O60516 100 aaPredicted RBP6.96□□□□□ -1.3
VPS53-202ENST00000389040 PRSS2P07478 247 aa6.96□□□□□ -1.3
VPS53-202ENST00000389040 Q9H8V8 135 aa6.96□□□□□ -1.3
VPS53-202ENST00000389040 LINC00588Q9Y4M8 146 aa6.96□□□□□ -1.3
VPS53-202ENST00000389040 IGKV3OR2-268A0A0C4DH90 116 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 LOC107984156A0A0G2JMH3 177 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 F8W1H4 67 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 CIRBPQ14011 172 aaKnown RBP6.95□□□□□ -1.3
VPS53-202ENST00000389040 LELP1Q5T871 98 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 LYRM7Q5U5X0 104 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 SFTA2Q6UW10 78 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 ARL17AQ8IVW1 177 aa6.95□□□□□ -1.3
VPS53-202ENST00000389040 IFITM1P13164 125 aa6.94□□□□□ -1.3
VPS53-202ENST00000389040 A0A1B0GUV1 79 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 TMEM262E9PQX1 116 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 K7ERU9 68 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 IGHV3-33P01772 117 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 PLECQ15149 4684 aaKnown RBP6.93□□□□□ -1.3
VPS53-202ENST00000389040 ZNF625Q96I27 306 aaPredicted RBP6.93□□□□□ -1.3
VPS53-202ENST00000389040 ERG28Q9UKR5 140 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 NPC2P61916 151 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 RBX1P62877 108 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 TTC32Q5I0X7 151 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 DAND5Q8N907 189 aa6.93□□□□□ -1.3
VPS53-202ENST00000389040 IGHV3OR16-9A0A0B4J2B5 98 aa6.92□□□□□ -1.3
VPS53-202ENST00000389040 PSMB2P49721 201 aa6.92□□□□□ -1.3
VPS53-202ENST00000389040 HERV-K104P63124 156 aa6.92□□□□□ -1.3
VPS53-202ENST00000389040 LINC00959A0A1B0GUT2 108 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 H7C2G1 150 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 DNAH10OSP0CZ25 163 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 COX7B2Q8TF08 81 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 PRO0461Q9UI25 63 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 TRBV20-1A0A075B6N2 111 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 A0A087WZ39 114 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 SCGB1C2P0DMR2 95 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 WFDC2Q14508 124 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 Q1RN00 199 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 MEIG1Q5JSS6 88 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 COPS9Q8WXC6 57 aa6.91□□□□□ -1.3
VPS53-202ENST00000389040 LYSTQ99698 3801 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 TCL1BO95988 128 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 RNF151Q2KHN1 245 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 LINC01556Q5JQF7 62 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 MTURNQ8N3F0 131 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 LINC00308Q8TCZ7 52 aa6.9□□□□□ -1.3
VPS53-202ENST00000389040 A0A0U1RRA0 63 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 NBDYA0A0U1RRE5 68 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 SS18Q15532 418 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 LCE2BO14633 110 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 Q6ZR54 194 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 C5orf38Q86SI9 138 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 TOMM7Q9P0U1 55 aa6.89□□□□□ -1.31
VPS53-202ENST00000389040 XCL1P47992 114 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 KMT2CQ8NEZ4 4911 aaKnown RBP6.88□□□□□ -1.31
VPS53-202ENST00000389040 ALMS1Q8TCU4 4167 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 TRBV30A0A0K0K1B3 111 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 SOSTDC1Q6X4U4 206 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 CBY1Q9Y3M2 126 aa6.88□□□□□ -1.31
VPS53-202ENST00000389040 DNAH1Q9P2D7 4330 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 TRIAP1O43715 76 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 RPL13AP40429 203 aaKnown RBP6.87□□□□□ -1.31
VPS53-202ENST00000389040 ETDBQ3ZM63 59 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 WFDC10BQ8IUB3 73 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 LINC00269Q8N2A0 174 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 PPDPFQ9H3Y8 114 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 VPS13DQ5THJ4 4388 aa6.87□□□□□ -1.31
VPS53-202ENST00000389040 VPS25Q9BRG1 176 aa6.86□□□□□ -1.31
VPS53-202ENST00000389040 ANGP03950 147 aaKnown RBP6.86□□□□□ -1.31
VPS53-202ENST00000389040 LINC01561Q8N1V8 128 aa6.86□□□□□ -1.31
VPS53-202ENST00000389040 Q8N3U1 123 aa6.86□□□□□ -1.31
VPS53-202ENST00000389040 IBA57-AS1B1ANH7 110 aa6.85□□□□□ -1.31
VPS53-202ENST00000389040 REG3AQ06141 175 aa6.85□□□□□ -1.31
VPS53-202ENST00000389040 ATXN8Q156A1 80 aa6.85□□□□□ -1.31
VPS53-202ENST00000389040 C1orf134Q5TEV5 83 aa6.85□□□□□ -1.31
VPS53-202ENST00000389040 CD164L2Q6UWJ8 174 aa6.84□□□□□ -1.31
VPS53-202ENST00000389040 LINC00336Q6ZUF6 198 aa6.84□□□□□ -1.31
VPS53-202ENST00000389040 MIR7-3HGQ8N6C7 128 aa6.84□□□□□ -1.31
VPS53-202ENST00000389040 SACSQ9NZJ4 4579 aa6.84□□□□□ -1.31
VPS53-202ENST00000389040 COX6CP09669 75 aa6.84□□□□□ -1.32
VPS53-202ENST00000389040 C6orf226Q5I0X4 101 aa6.84□□□□□ -1.32
VPS53-202ENST00000389040 Q8IZM0 81 aa6.84□□□□□ -1.32
VPS53-202ENST00000389040 C6orf223Q8N319 242 aa6.84□□□□□ -1.32
VPS53-202ENST00000389040 CHCHD10Q8WYQ3 142 aaPredicted RBP6.84□□□□□ -1.32
VPS53-202ENST00000389040 COX7A2LO14548 114 aa6.83□□□□□ -1.32
VPS53-202ENST00000389040 LINC00158P58513 81 aa6.83□□□□□ -1.32
VPS53-202ENST00000389040 IGLV10-54A0A075B6I4 117 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 J3QR89 54 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 M0R2N4 97 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 KMT2AQ03164 3969 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 C9JAW5 83 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 M0QXV9 152 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 SLC25A20O43772 301 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 RMI2Q96E14 147 aa6.82□□□□□ -1.32
VPS53-202ENST00000389040 PFN2P35080 140 aa6.81□□□□□ -1.32
VPS53-202ENST00000389040 LINC01620Q4KN68 170 aa6.81□□□□□ -1.32
VPS53-202ENST00000389040 TEN1Q86WV5 123 aa6.81□□□□□ -1.32
VPS53-202ENST00000389040 KRTAP1-5Q9BYS1 174 aa6.81□□□□□ -1.32
VPS53-202ENST00000389040 SND1-IT1Q9HBX3 110 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms