RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 DOCK1Q14185 1865 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 PAPPA2Q9BXP8 1791 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 PATJQ8NI35 1801 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 PIGBOS1A0A0B4J2F0 54 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 SPAARA0A1B0GVQ0 90 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 Q6AWC8 147 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 TARBP1Q13395 1621 aaKnown RBP0.06□□□□□ -2.4
VPS13A-206ENST00000376646 DIP2BQ9P265 1576 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 MRC1P22897 1456 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 SPHKAPQ2M3C7 1700 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 MARF1Q9Y4F3 1742 aaKnown RBP0.06□□□□□ -2.4
VPS13A-206ENST00000376646 KIF21BO75037 1637 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 PLECQ15149 4684 aaKnown RBP0.06□□□□□ -2.4
VPS13A-206ENST00000376646 Q5VV11 94 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 C12orf73Q69YU5 71 aa0.06□□□□□ -2.4
VPS13A-206ENST00000376646 PKDREJQ9NTG1 2253 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 PXDNQ92626 1479 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 MBD5Q9P267 1494 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 ASXL1Q8IXJ9 1541 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 MIF4GDA9UHW6 222 aaKnown RBP0.05□□□□□ -2.4
VPS13A-206ENST00000376646 K7EP13 123 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 ZZEF1O43149 2961 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 KRTAP20-2Q3LI61 65 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 TTC9CQ8N5M4 171 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 NAA60Q9H7X0 242 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 SCN3BQ9NY72 215 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 R4GMQ9 66 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 ABCC5O15440 1437 aa0.05□□□□□ -2.4
VPS13A-206ENST00000376646 SMG6Q86US8 1419 aaKnown RBP0.05□□□□□ -2.4
VPS13A-206ENST00000376646 LOC100130705A0A1B0GUX0 176 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 M0R135 149 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.04□□□□□ -2.4
VPS13A-206ENST00000376646 PRO0255Q9UI72 69 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 TRIOO75962 3097 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 RNF17Q9BXT8 1623 aaKnown RBP0.04□□□□□ -2.4
VPS13A-206ENST00000376646 DOCK2Q92608 1830 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 CROCC2H7BZ55 1655 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 TNRC6CQ9HCJ0 1690 aaKnown RBP0.04□□□□□ -2.4
VPS13A-206ENST00000376646 CSMD2Q7Z408 3487 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 URB1O60287 2271 aaKnown RBP0.04□□□□□ -2.4
VPS13A-206ENST00000376646 PIN1P1O15428 100 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 IFITM1P13164 125 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 Q5VSD8 79 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 U3KQA8 63 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 DNAH14Q0VDD8 3507 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 RGPD1P0DJD0 1748 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 FAT1Q14517 4588 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 TNXBP22105 4242 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 ZNF236Q9UL36 1845 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 USP32Q8NFA0 1604 aa0.04□□□□□ -2.4
VPS13A-206ENST00000376646 SACSQ9NZJ4 4579 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 C1orf167Q5SNV9 1468 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 CTXND1A0A1B0GTU2 59 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 SPINK8P0C7L1 97 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 SPAG11BQ08648 103 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 SPAG11AQ6PDA7 123 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 LENEPQ9Y5L5 61 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 V9GYH0 126 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 LRRC37A2A6NM11 1700 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 DNMBPQ6XZF7 1577 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 CMYA5Q8N3K9 4069 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 PI4KAP42356 2102 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 NAIPQ13075 1403 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 A0A0D9SFI3 127 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 CFDP00746 253 aaPredicted RBP0.03□□□□□ -2.4
VPS13A-206ENST00000376646 BTG2P78543 158 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 Q56UQ5 140 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 TSLPQ969D9 159 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 SPRR2FQ96RM1 72 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 CNFNQ9BYD5 112 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 ATMQ13315 3056 aa0.03□□□□□ -2.4
VPS13A-206ENST00000376646 HAMPP81172 84 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 CATR1Q13166 79 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 PPP3R2Q96LZ3 170 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 SPRR2GQ9BYE4 73 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 CYP4F30PQ9H0H9 118 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 NUP188Q5SRE5 1749 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 WNK3Q9BYP7 1800 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 CHD7Q9P2D1 2997 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 KNL1Q8NG31 2342 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 APOC2P02655 101 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 FGF7P21781 194 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 SMIM4Q8WVI0 70 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 C1orf54Q8WWF1 131 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 PLXNB2O15031 1838 aa0.02□□□□□ -2.41
VPS13A-206ENST00000376646 CPSF1Q10570 1443 aaKnown RBP0.02□□□□□ -2.41
VPS13A-206ENST00000376646 DNAH9Q9NYC9 4486 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 GOLGA4Q13439 2230 aaKnown RBP0.01□□□□□ -2.41
VPS13A-206ENST00000376646 USF3Q68DE3 2245 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 SHPRHQ149N8 1683 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 KDM3BQ7LBC6 1761 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 TRAV22A0A0B4J277 110 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 NDUFA4L2Q9NRX3 87 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 ROCK2O75116 1388 aaKnown RBP0.01□□□□□ -2.41
VPS13A-206ENST00000376646 FAT2Q9NYQ8 4349 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 SMG1Q96Q15 3661 aaKnown RBP0.01□□□□□ -2.41
VPS13A-206ENST00000376646 GAPVD1Q14C86 1478 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 MLH3Q9UHC1 1453 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 NRXN3Q9Y4C0 1643 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 M0R3E3 92 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms