RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ST20-AS1Q8NBB2 130 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 PCNX1Q96RV3 2341 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 TYMSOSQ8TAI1 123 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 P0C879 139 aa5.16□□□□□ -1.58
VPS13A-202ENST00000357409 SMIM1B2RUZ4 78 aa5.15□□□□□ -1.58
VPS13A-202ENST00000357409 KIAA1549Q9HCM3 1950 aa5.15□□□□□ -1.58
VPS13A-202ENST00000357409 KLLNB2CW77 178 aa5.15□□□□□ -1.59
VPS13A-202ENST00000357409 ODF3Q96PU9 254 aa5.15□□□□□ -1.59
VPS13A-202ENST00000357409 HIGD1BQ9P298 99 aa5.14□□□□□ -1.59
VPS13A-202ENST00000357409 SIP14410 1827 aa5.14□□□□□ -1.59
VPS13A-202ENST00000357409 CUL9Q8IWT3 2517 aa5.14□□□□□ -1.59
VPS13A-202ENST00000357409 Q96NJ1 140 aa5.14□□□□□ -1.59
VPS13A-202ENST00000357409 URB1-AS1Q96HZ7 61 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 PCDH15Q96QU1 1955 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 H0Y9P7 68 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 FAM168BA1KXE4 195 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 RTL8CO15255 209 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 NTM-AS1Q6ZSK4 140 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 DHRS4-AS1Q9P1J3 65 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 LINC00167Q96N53 147 aa5.13□□□□□ -1.59
VPS13A-202ENST00000357409 NBASA2RRP1 2371 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 Q8IZM0 81 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 TMEM131Q92545 1883 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 IGIPA6NJ69 53 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 Q8N814 137 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 TANC1Q9C0D5 1861 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 C2orf91Q6ZV80 131 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 COX6B2Q6YFQ2 88 aa5.12□□□□□ -1.59
VPS13A-202ENST00000357409 NDUFC2-KCTD14E9PQ53 114 aa5.11□□□□□ -1.59
VPS13A-202ENST00000357409 LINC00474Q9P2X8 69 aa5.11□□□□□ -1.59
VPS13A-202ENST00000357409 RIF1Q5UIP0 2472 aaKnown RBP5.11□□□□□ -1.59
VPS13A-202ENST00000357409 LINC01554Q52M75 96 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 TRIOO75962 3097 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 OBSL1O75147 1896 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 LINC00574Q9H8X3 128 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 MED12LQ86YW9 2145 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 NOTCH3Q9UM47 2321 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 VPS13AQ96RL7 3174 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 J3KT08 172 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 C16orf95Q9H693 158 aa5.1□□□□□ -1.59
VPS13A-202ENST00000357409 MRPS36P82909 103 aaKnown RBP5.09□□□□□ -1.59
VPS13A-202ENST00000357409 DSCAMO60469 2012 aa5.09□□□□□ -1.59
VPS13A-202ENST00000357409 FAM240AA0A1B0GVK7 77 aa5.09□□□□□ -1.59
VPS13A-202ENST00000357409 DCHS1Q96JQ0 3298 aa5.09□□□□□ -1.59
VPS13A-202ENST00000357409 SMIM29Q86T20 159 aa5.09□□□□□ -1.59
VPS13A-202ENST00000357409 MUC7Q8TAX7 377 aa5.09□□□□□ -1.6
VPS13A-202ENST00000357409 PRR14LQ5THK1 2151 aa5.08□□□□□ -1.6
VPS13A-202ENST00000357409 SHANK1Q9Y566 2161 aa5.08□□□□□ -1.6
VPS13A-202ENST00000357409 PCNX3Q9H6A9 2034 aa5.08□□□□□ -1.6
VPS13A-202ENST00000357409 LAMA2P24043 3122 aaKnown RBP5.08□□□□□ -1.6
VPS13A-202ENST00000357409 LINC00588Q9Y4M8 146 aa5.08□□□□□ -1.6
VPS13A-202ENST00000357409 EGFEM1PQ0D2K5 195 aa5.07□□□□□ -1.6
VPS13A-202ENST00000357409 FREM1Q5H8C1 2179 aa5.07□□□□□ -1.6
VPS13A-202ENST00000357409 UQCRQO14949 82 aa5.07□□□□□ -1.6
VPS13A-202ENST00000357409 PDE6GP18545 87 aa5.07□□□□□ -1.6
VPS13A-202ENST00000357409 CREBBPQ92793 2442 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 TMEM254Q8TBM7 123 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 CDIP1Q9H305 208 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 TRBV7-7A0A0K0K1E9 115 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 HIVEP2P31629 2446 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 Q8N2B8 174 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 NUP210LQ5VU65 1888 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 LINC00846Q9NV44 126 aa5.06□□□□□ -1.6
VPS13A-202ENST00000357409 SPAG11AQ6PDA7 123 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 RAI1Q7Z5J4 1906 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-202ENST00000357409 SPATA3Q8NHX4 192 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 LINC00313P59037 77 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 KRTAP10-3P60369 221 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 C6orf48Q9UBA6 75 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 NHLRC4P0CG21 123 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-202ENST00000357409 KRTAP10-11P60412 298 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 PMAIP1Q13794 54 aa5.05□□□□□ -1.6
VPS13A-202ENST00000357409 NUP210Q8TEM1 1887 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-202ENST00000357409 ALPK3Q96L96 1907 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 CFAP47Q6ZTR5 3102 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 PLXNB3Q9ULL4 1909 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 COX17Q14061 63 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 APLNQ9ULZ1 77 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 hDV103S1A0JD37 113 aa5.04□□□□□ -1.6
VPS13A-202ENST00000357409 WDFY4Q6ZS81 3184 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 COL4A4P53420 1690 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-202ENST00000357409 DSCR10P59022 87 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 IGLV6-57P01721 117 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 WWC2-AS2Q96NR7 200 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 IMUPQ9GZP8 106 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 SORL1Q92673 2214 aa5.03□□□□□ -1.6
VPS13A-202ENST00000357409 C1orf64Q8NEQ6 169 aa5.02□□□□□ -1.61
VPS13A-202ENST00000357409 SPTAN1Q13813 2472 aaKnown RBP5.02□□□□□ -1.61
VPS13A-202ENST00000357409 COL5A1P20908 1838 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-202ENST00000357409 MUC4Q99102 2169 aa5.02□□□□□ -1.61
VPS13A-202ENST00000357409 NBDYA0A0U1RRE5 68 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 Q6ZRP5 223 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 LINC00476Q8WZB0 136 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 EPM2AB3EWF7 344 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 TM2D3Q9BRN9 247 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 A0A0C4DFX4 3053 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 COX7CP15954 63 aa5.01□□□□□ -1.61
VPS13A-202ENST00000357409 A0A1B0GU69 56 aa5□□□□□ -1.61
VPS13A-202ENST00000357409 K7EIL1 84 aa5□□□□□ -1.61
VPS13A-202ENST00000357409 MUC6Q6W4X9 2439 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms