RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 SPTBN4Q9H254 2564 aa7.32□□□□□ -1.24
CHD3-201ENST00000330494 LST1O00453 97 aa7.32□□□□□ -1.24
CHD3-201ENST00000330494 ZNF580Q9UK33 172 aa7.32□□□□□ -1.24
CHD3-201ENST00000330494 JMJD1CQ15652 2540 aa7.32□□□□□ -1.24
CHD3-201ENST00000330494 PLAC8L1A1L4L8 177 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 PSPHP1O15172 72 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 WFDC13Q8IUB5 93 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 C6orf223Q8N319 242 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 ABCA12Q86UK0 2595 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 A0A087WVE0 104 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 URB1-AS1Q96HZ7 61 aa7.31□□□□□ -1.24
CHD3-201ENST00000330494 IGIPA6NJ69 53 aa7.3□□□□□ -1.24
CHD3-201ENST00000330494 MRPS36P82909 103 aaKnown RBP7.3□□□□□ -1.24
CHD3-201ENST00000330494 M0R378 163 aa7.3□□□□□ -1.24
CHD3-201ENST00000330494 FHL2Q14192 279 aa7.3□□□□□ -1.24
CHD3-201ENST00000330494 MKI67P46013 3256 aaKnown RBP7.3□□□□□ -1.24
CHD3-201ENST00000330494 LINC00242Q5T6M2 205 aa7.29□□□□□ -1.24
CHD3-201ENST00000330494 Q6JHZ5 121 aa7.29□□□□□ -1.24
CHD3-201ENST00000330494 CHCHD7Q9BUK0 85 aa7.29□□□□□ -1.24
CHD3-201ENST00000330494 LINC00310P59036 64 aa7.29□□□□□ -1.24
CHD3-201ENST00000330494 COL4A2P08572 1712 aa7.28□□□□□ -1.24
CHD3-201ENST00000330494 RETNLBQ9BQ08 111 aa7.28□□□□□ -1.24
CHD3-201ENST00000330494 CELA1Q9UNI1 258 aa7.28□□□□□ -1.24
CHD3-201ENST00000330494 CNFNQ9BYD5 112 aa7.28□□□□□ -1.24
CHD3-201ENST00000330494 TSPEAR-AS2P59090 65 aa7.27□□□□□ -1.24
CHD3-201ENST00000330494 C16orf95Q9H693 158 aa7.27□□□□□ -1.25
CHD3-201ENST00000330494 DOPEY1Q5JWR5 2465 aa7.27□□□□□ -1.25
CHD3-201ENST00000330494 TRAV7A0A075B6U4 112 aa7.26□□□□□ -1.25
CHD3-201ENST00000330494 Q8IZM0 81 aa7.26□□□□□ -1.25
CHD3-201ENST00000330494 SETD2Q9BYW2 2564 aaPredicted RBP7.26□□□□□ -1.25
CHD3-201ENST00000330494 ZNF73O43830 326 aaPredicted RBP7.25□□□□□ -1.25
CHD3-201ENST00000330494 SMIM1B2RUZ4 78 aa7.25□□□□□ -1.25
CHD3-201ENST00000330494 CHD8Q9HCK8 2581 aa7.25□□□□□ -1.25
CHD3-201ENST00000330494 Q8N9L7 120 aa7.24□□□□□ -1.25
CHD3-201ENST00000330494 COX17Q14061 63 aa7.24□□□□□ -1.25
CHD3-201ENST00000330494 CIRBP-AS1Q8TBR5 109 aa7.24□□□□□ -1.25
CHD3-201ENST00000330494 ADAMTSL4-AS1Q5T5F5 129 aa7.24□□□□□ -1.25
CHD3-201ENST00000330494 CEP295Q9C0D2 2601 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 TRBV10-3A0A0K0K1G6 114 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 NUPR2A6NF83 97 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 DHRS4-AS1Q9P1J3 65 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 IGLV5-52A0A0A0MRZ9 124 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 PRYO14603 147 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 A8MTW9 85 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 PRO0628Q9UI54 55 aa7.23□□□□□ -1.25
CHD3-201ENST00000330494 USP9XQ93008 2570 aaPredicted RBP7.22□□□□□ -1.25
CHD3-201ENST00000330494 A0A087WYN8 130 aa7.22□□□□□ -1.25
CHD3-201ENST00000330494 C4orf26Q17RF5 130 aa7.22□□□□□ -1.25
CHD3-201ENST00000330494 BRCA2P51587 3418 aa7.22□□□□□ -1.25
CHD3-201ENST00000330494 ANKRD17O75179 2603 aaKnown RBP7.22□□□□□ -1.25
CHD3-201ENST00000330494 X6R8D5 127 aa7.21□□□□□ -1.25
CHD3-201ENST00000330494 PRRC2CQ9Y520 2896 aaKnown RBP7.21□□□□□ -1.26
CHD3-201ENST00000330494 LYPD5Q6UWN5 251 aa7.21□□□□□ -1.26
CHD3-201ENST00000330494 BEAN1Q3B7T3 259 aa7.21□□□□□ -1.26
CHD3-201ENST00000330494 LINC01556Q5JQF7 62 aa7.2□□□□□ -1.26
CHD3-201ENST00000330494 TRBV7-6A0A0J9YX20 115 aa7.2□□□□□ -1.26
CHD3-201ENST00000330494 REG3GQ6UW15 175 aa7.2□□□□□ -1.26
CHD3-201ENST00000330494 SERTAD4-AS1Q5TG53 156 aa7.19□□□□□ -1.26
CHD3-201ENST00000330494 ZNF706Q9Y5V0 76 aaPredicted RBP7.19□□□□□ -1.26
CHD3-201ENST00000330494 C10orf25Q5T742 122 aa7.19□□□□□ -1.26
CHD3-201ENST00000330494 A0A096LNJ9 63 aa7.19□□□□□ -1.26
CHD3-201ENST00000330494 DEFB116Q30KQ4 102 aa7.18□□□□□ -1.26
CHD3-201ENST00000330494 LINC00208Q96KT6 92 aa7.18□□□□□ -1.26
CHD3-201ENST00000330494 CDIP1Q9H305 208 aa7.18□□□□□ -1.26
CHD3-201ENST00000330494 LINC00474Q9P2X8 69 aa7.18□□□□□ -1.26
CHD3-201ENST00000330494 Q8N814 137 aa7.17□□□□□ -1.26
CHD3-201ENST00000330494 C1orf137Q5JT78 98 aa7.17□□□□□ -1.26
CHD3-201ENST00000330494 AMELXQ99217 191 aa7.17□□□□□ -1.26
CHD3-201ENST00000330494 TRBV7-7A0A0K0K1E9 115 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 EGFEM1PQ0D2K5 195 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 FHL3Q13643 280 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 Q6ZRU5 148 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 NTM-AS1Q6ZSK4 140 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.16□□□□□ -1.26
CHD3-201ENST00000330494 Q8N3U1 123 aa7.16□□□□□ -1.26
CHD3-201ENST00000330494 PLA2G1BP04054 148 aaKnown RBP7.15□□□□□ -1.27
CHD3-201ENST00000330494 USP9YO00507 2555 aaPredicted RBP7.15□□□□□ -1.27
CHD3-201ENST00000330494 CHD7Q9P2D1 2997 aa7.15□□□□□ -1.27
CHD3-201ENST00000330494 C1orf134Q5TEV5 83 aa7.15□□□□□ -1.27
CHD3-201ENST00000330494 Q9UF83 564 aa7.15□□□□□ -1.27
CHD3-201ENST00000330494 LAMA3Q16787 3333 aa7.14□□□□□ -1.27
CHD3-201ENST00000330494 PRLHP81277 87 aa7.14□□□□□ -1.27
CHD3-201ENST00000330494 CRYGAP11844 174 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 COX8CQ7Z4L0 72 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 RPL28P46779 137 aaKnown RBP7.13□□□□□ -1.27
CHD3-201ENST00000330494 POLQO75417 2590 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 ZNF462Q96JM2 2506 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 C11orf72Q8NBR9 251 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 PCOTHQ58A44 107 aa7.13□□□□□ -1.27
CHD3-201ENST00000330494 ESRGQ1W209 222 aa7.12□□□□□ -1.27
CHD3-201ENST00000330494 IGHV6-1A0A0B4J1U7 121 aa7.12□□□□□ -1.27
CHD3-201ENST00000330494 XIRP2A4UGR9 3374 aa7.12□□□□□ -1.27
CHD3-201ENST00000330494 FSHBP01225 129 aa7.12□□□□□ -1.27
CHD3-201ENST00000330494 Q9BRP9 147 aa7.12□□□□□ -1.27
CHD3-201ENST00000330494 SBSPONQ8IVN8 264 aa7.11□□□□□ -1.27
CHD3-201ENST00000330494 Q8N2B8 174 aa7.11□□□□□ -1.27
CHD3-201ENST00000330494 TMEM254Q8TBM7 123 aa7.11□□□□□ -1.27
CHD3-201ENST00000330494 ACANP16112 2415 aa7.11□□□□□ -1.27
CHD3-201ENST00000330494 KRTAP24-1Q3LI83 254 aa7.1□□□□□ -1.27
CHD3-201ENST00000330494 A0A1B0GUV1 79 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms