RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 CRYGAP11844 174 aa8.89□□□□□ -0.99
DDX39A-202ENST00000324340 PPDPFQ9H3Y8 114 aa8.89□□□□□ -0.99
DDX39A-202ENST00000324340 H3BNG1 76 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 GYPEP15421 78 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 ZNF22P17026 224 aaPredicted RBP8.88□□□□□ -0.99
DDX39A-202ENST00000324340 Q6ZTC4 211 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 C5orf38Q86SI9 138 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 DAND5Q8N907 189 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 COPS9Q8WXC6 57 aa8.88□□□□□ -0.99
DDX39A-202ENST00000324340 NANOS2P60321 138 aaKnown RBP8.87□□□□□ -0.99
DDX39A-202ENST00000324340 CHCHD5Q9BSY4 110 aa8.87□□□□□ -0.99
DDX39A-202ENST00000324340 IGHV3-38A0A0C4DH36 116 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 ATOX1O00244 68 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 HTN3P15516 51 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 COX7CP15954 63 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 NTM-AS1Q6ZSK4 140 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 C20orf203Q8NBC4 194 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 DEFB104AQ8WTQ1 72 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 CHCHD7Q9BUK0 85 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 PYGO1Q9Y3Y4 419 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 MEGF8Q7Z7M0 2845 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 FAM236AA0A1B0GUQ0 79 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 FAM236BA0A1B0GV22 79 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 MIAQ16674 131 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 LITAFQ99732 161 aa8.86□□□□□ -0.99
DDX39A-202ENST00000324340 HIST1H4AP62805 103 aaKnown RBP8.85□□□□□ -0.99
DDX39A-202ENST00000324340 HERVK_113P63121 156 aa8.85□□□□□ -0.99
DDX39A-202ENST00000324340 TENM3Q9P273 2699 aa8.84□□□□□ -0.99
DDX39A-202ENST00000324340 DEFB131BA0A096LNP1 70 aa8.84□□□□□ -0.99
DDX39A-202ENST00000324340 TRACP01848 142 aa8.84□□□□□ -0.99
DDX39A-202ENST00000324340 INAFM2P0DMQ5 153 aa8.84□□□□□ -0.99
DDX39A-202ENST00000324340 RPL39P62891 51 aaKnown RBP8.84□□□□□ -0.99
DDX39A-202ENST00000324340 A0A096LPF7 62 aa8.83□□□□□ -1
DDX39A-202ENST00000324340 TRAV10A0A0B4J240 114 aa8.83□□□□□ -1
DDX39A-202ENST00000324340 TMEM258P61165 79 aa8.83□□□□□ -1
DDX39A-202ENST00000324340 TRBV6-8A0A0A6YYG3 113 aa8.82□□□□□ -1
DDX39A-202ENST00000324340 H7C2G1 150 aa8.82□□□□□ -1
DDX39A-202ENST00000324340 MRPS36P82909 103 aaKnown RBP8.82□□□□□ -1
DDX39A-202ENST00000324340 GAGE2AQ6NT46 116 aa8.82□□□□□ -1
DDX39A-202ENST00000324340 TIMM21Q9BVV7 248 aa8.82□□□□□ -1
DDX39A-202ENST00000324340 IGHV1-58A0A0C4DH39 117 aa8.81□□□□□ -1
DDX39A-202ENST00000324340 TMEM243Q9BU79 118 aa8.81□□□□□ -1
DDX39A-202ENST00000324340 UBE2D4Q9Y2X8 147 aa8.81□□□□□ -1
DDX39A-202ENST00000324340 HUWE1Q7Z6Z7 4374 aaKnown RBP8.8□□□□□ -1
DDX39A-202ENST00000324340 IGHV3-30-3P0DP02 117 aa8.8□□□□□ -1
DDX39A-202ENST00000324340 TIRAPP58753 221 aa8.8□□□□□ -1
DDX39A-202ENST00000324340 FAM19A5Q7Z5A7 132 aaPredicted RBP8.8□□□□□ -1
DDX39A-202ENST00000324340 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.79□□□□□ -1
DDX39A-202ENST00000324340 IGKV2-29A2NJV5 120 aaPredicted RBP8.79□□□□□ -1
DDX39A-202ENST00000324340 COX7A2LO14548 114 aa8.79□□□□□ -1
DDX39A-202ENST00000324340 FAM104AQ969W3 186 aa8.79□□□□□ -1
DDX39A-202ENST00000324340 C2orf48Q96LS8 159 aa8.79□□□□□ -1
DDX39A-202ENST00000324340 IGLV4-3A0A075B6K6 122 aa8.78□□□□□ -1
DDX39A-202ENST00000324340 TINCRA0A1B0GVN0 87 aa8.78□□□□□ -1
DDX39A-202ENST00000324340 NDUFA12Q9UI09 145 aa8.78□□□□□ -1
DDX39A-202ENST00000324340 NDUFC2-KCTD14E9PQ53 114 aa8.77□□□□□ -1.01
DDX39A-202ENST00000324340 DNAH9Q9NYC9 4486 aa8.76□□□□□ -1.01
DDX39A-202ENST00000324340 CIRBPQ14011 172 aaKnown RBP8.76□□□□□ -1.01
DDX39A-202ENST00000324340 LELP1Q5T871 98 aa8.76□□□□□ -1.01
DDX39A-202ENST00000324340 CEMP1Q6PRD7 247 aaPredicted RBP8.76□□□□□ -1.01
DDX39A-202ENST00000324340 LYPD5Q6UWN5 251 aa8.76□□□□□ -1.01
DDX39A-202ENST00000324340 A0A0J9YXV3 536 aa8.75□□□□□ -1.01
DDX39A-202ENST00000324340 UBE2L6O14933 153 aa8.75□□□□□ -1.01
DDX39A-202ENST00000324340 PRSS2P07478 247 aa8.75□□□□□ -1.01
DDX39A-202ENST00000324340 OPRPNQ99935 248 aaPredicted RBP8.75□□□□□ -1.01
DDX39A-202ENST00000324340 A0A1B0GUV1 79 aa8.74□□□□□ -1.01
DDX39A-202ENST00000324340 NDUFA1O15239 70 aa8.74□□□□□ -1.01
DDX39A-202ENST00000324340 RPL18AQ02543 176 aaKnown RBP8.74□□□□□ -1.01
DDX39A-202ENST00000324340 Q6JHZ5 121 aa8.74□□□□□ -1.01
DDX39A-202ENST00000324340 CLEC2BQ92478 149 aa8.74□□□□□ -1.01
DDX39A-202ENST00000324340 TRAV8-3A0A0A6YYJ7 113 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 SERP2Q8N6R1 65 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 CDC42SE2Q9NRR3 84 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 COL7A1Q02388 2944 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 DGAT2L7PQ6IED9 249 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 SMCR5Q8TEV8 140 aa8.73□□□□□ -1.01
DDX39A-202ENST00000324340 IGLV5-45A0A087WSX0 123 aa8.72□□□□□ -1.01
DDX39A-202ENST00000324340 ESRGQ1W209 222 aa8.72□□□□□ -1.01
DDX39A-202ENST00000324340 ADAMTSL4-AS1Q5T5F5 129 aa8.72□□□□□ -1.01
DDX39A-202ENST00000324340 DPH3Q96FX2 82 aa8.72□□□□□ -1.01
DDX39A-202ENST00000324340 IGLV4-60A0A075B6I1 120 aa8.71□□□□□ -1.02
DDX39A-202ENST00000324340 TGP01266 2768 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 LOC107984640A0A0U1RRK4 108 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 NUPR2A6NF83 97 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 BCE1O60756 84 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 BAALC-AS2P0C853 105 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 FAM19A3Q7Z5A8 133 aa8.7□□□□□ -1.02
DDX39A-202ENST00000324340 NDUFC2O95298 119 aa8.69□□□□□ -1.02
DDX39A-202ENST00000324340 RNASE13Q5GAN3 156 aaKnown RBP8.69□□□□□ -1.02
DDX39A-202ENST00000324340 LINC00308Q8TCZ7 52 aa8.68□□□□□ -1.02
DDX39A-202ENST00000324340 UPK3BQ9BT76 320 aa8.68□□□□□ -1.02
DDX39A-202ENST00000324340 APLNQ9ULZ1 77 aa8.68□□□□□ -1.02
DDX39A-202ENST00000324340 PRKDCP78527 4128 aaKnown RBP8.68□□□□□ -1.02
DDX39A-202ENST00000324340 S100A7L2Q5SY68 101 aa8.67□□□□□ -1.02
DDX39A-202ENST00000324340 ATP5EP2Q5VTU8 51 aa8.67□□□□□ -1.02
DDX39A-202ENST00000324340 OBSCN-AS1Q96MR7 158 aa8.67□□□□□ -1.02
DDX39A-202ENST00000324340 IGLV5-39A0A0G2JS06 123 aa8.66□□□□□ -1.02
DDX39A-202ENST00000324340 CCL18P55774 89 aa8.66□□□□□ -1.02
DDX39A-202ENST00000324340 WFDC10BQ8IUB3 73 aa8.66□□□□□ -1.02
DDX39A-202ENST00000324340 KLK5Q9Y337 293 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms