RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ABCA1O95477 2261 aa5.39□□□□□ -1.55
LIMCH1-201ENST00000313860 DMAC1Q96GE9 116 aa5.39□□□□□ -1.55
LIMCH1-201ENST00000313860 POLEQ07864 2286 aa5.39□□□□□ -1.55
LIMCH1-201ENST00000313860 IGLV11-55A0A075B6I3 123 aa5.39□□□□□ -1.55
LIMCH1-201ENST00000313860 ARHGAP21Q5T5U3 1957 aa5.39□□□□□ -1.55
LIMCH1-201ENST00000313860 COL6A6A6NMZ7 2263 aa5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 DSCAMO60469 2012 aa5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 IGLV5-37A0A075B6J1 123 aa5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 CADP27708 2225 aa5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 LELP1Q5T871 98 aa5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 C1orf147Q96MC9 270 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-201ENST00000313860 PRO0461Q9UI25 63 aa5.37□□□□□ -1.55
LIMCH1-201ENST00000313860 ZNF503-AS2A6NEH8 195 aa5.37□□□□□ -1.55
LIMCH1-201ENST00000313860 EIF4EBP1Q13541 118 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-201ENST00000313860 FLVCR1-AS1Q8TAF5 88 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 Q6YL49 198 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 LINC01006Q8NI28 216 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 P0C879 139 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 EGFEM1PQ0D2K5 195 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 LINC00242Q5T6M2 205 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 IGFL2Q6UWQ7 119 aa5.36□□□□□ -1.55
LIMCH1-201ENST00000313860 ROMO1P60602 79 aa5.35□□□□□ -1.55
LIMCH1-201ENST00000313860 SPRNQ5BIV9 151 aa5.35□□□□□ -1.55
LIMCH1-201ENST00000313860 MYOFQ9NZM1 2061 aa5.35□□□□□ -1.55
LIMCH1-201ENST00000313860 PHF3Q92576 2039 aaKnown RBP5.35□□□□□ -1.55
LIMCH1-201ENST00000313860 PLCE1Q9P212 2302 aa5.35□□□□□ -1.55
LIMCH1-201ENST00000313860 KIAA1549LQ6ZVL6 1849 aa5.34□□□□□ -1.55
LIMCH1-201ENST00000313860 CEP250Q9BV73 2442 aa5.34□□□□□ -1.55
LIMCH1-201ENST00000313860 DSCR10P59022 87 aa5.34□□□□□ -1.55
LIMCH1-201ENST00000313860 CDSNQ15517 529 aa5.34□□□□□ -1.56
LIMCH1-201ENST00000313860 PCNX3Q9H6A9 2034 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 Q8N1X5 172 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 TYMSOSQ8TAI1 123 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 COL4A2P08572 1712 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 ATG2AQ2TAZ0 1938 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 SEC61BP60468 96 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 ZNF580Q9UK33 172 aa5.33□□□□□ -1.56
LIMCH1-201ENST00000313860 PRRC2AP48634 2157 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 FAM104AQ969W3 186 aa5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 CDC42SE2Q9NRR3 84 aa5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 J3QL48 77 aa5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 TRBV7-4A0A0J9YYF1 115 aa5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 EML6Q6ZMW3 1958 aa5.32□□□□□ -1.56
LIMCH1-201ENST00000313860 LINC00476Q8WZB0 136 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 J3QKU1 62 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 C11orf72Q8NBR9 251 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 PKDREJQ9NTG1 2253 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 PSMG3-AS1Q96PY0 264 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 SPTBN2O15020 2390 aa5.31□□□□□ -1.56
LIMCH1-201ENST00000313860 TRIOBPQ9H2D6 2365 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 BCE1O60756 84 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 TNCP24821 2201 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 E7EUB6 86 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 IGLV3-1P01715 115 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 GAS8-AS1O95177 125 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 LINC00310P59036 64 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 Q8NAQ8 132 aa5.3□□□□□ -1.56
LIMCH1-201ENST00000313860 Q6ZRP5 223 aa5.29□□□□□ -1.56
LIMCH1-201ENST00000313860 A8MWP4 228 aa5.29□□□□□ -1.56
LIMCH1-201ENST00000313860 Q8N2B8 174 aa5.29□□□□□ -1.56
LIMCH1-201ENST00000313860 C9orf163Q8N9P6 203 aa5.29□□□□□ -1.56
LIMCH1-201ENST00000313860 COL4A6Q14031 1691 aa5.28□□□□□ -1.56
LIMCH1-201ENST00000313860 FREM1Q5H8C1 2179 aa5.28□□□□□ -1.56
LIMCH1-201ENST00000313860 OBSL1O75147 1896 aa5.28□□□□□ -1.56
LIMCH1-201ENST00000313860 OBSCN-AS1Q96MR7 158 aa5.28□□□□□ -1.56
LIMCH1-201ENST00000313860 KIAA1549Q9HCM3 1950 aa5.28□□□□□ -1.56
LIMCH1-201ENST00000313860 RTL8CO15255 209 aa5.27□□□□□ -1.57
LIMCH1-201ENST00000313860 DEFB114Q30KQ6 69 aa5.27□□□□□ -1.57
LIMCH1-201ENST00000313860 KRTAP27-1Q3LI81 207 aa5.27□□□□□ -1.57
LIMCH1-201ENST00000313860 Q8N7P7 452 aa5.27□□□□□ -1.57
LIMCH1-201ENST00000313860 NCOA6Q14686 2063 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 CRIP1P50238 77 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 LINC00167Q96N53 147 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 WNK1Q9H4A3 2382 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 MRGPRG-AS1Q2M3A8 158 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 ST20-AS1Q8NBB2 130 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 MED13Q9UHV7 2174 aa5.26□□□□□ -1.57
LIMCH1-201ENST00000313860 CPAMD8Q8IZJ3 1885 aa5.25□□□□□ -1.57
LIMCH1-201ENST00000313860 SORL1Q92673 2214 aa5.25□□□□□ -1.57
LIMCH1-201ENST00000313860 C20orf166-AS1Q96NR2 134 aa5.25□□□□□ -1.57
LIMCH1-201ENST00000313860 KLK9Q2XQG4 91 aa5.25□□□□□ -1.57
LIMCH1-201ENST00000313860 ADAMTS9Q9P2N4 1935 aa5.25□□□□□ -1.57
LIMCH1-201ENST00000313860 FAM229BQ4G0N7 80 aa5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 BRI3O95415 125 aa5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 RP1L1Q8IWN7 2480 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 A0A1B0GU33 70 aa5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 NDUFAF8A1L188 74 aa5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 CRIP3Q6Q6R5 217 aa5.24□□□□□ -1.57
LIMCH1-201ENST00000313860 M0R2T5 61 aa5.23□□□□□ -1.57
LIMCH1-201ENST00000313860 PHF5AQ7RTV0 110 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-201ENST00000313860 K7EQG2 157 aa5.23□□□□□ -1.57
LIMCH1-201ENST00000313860 PTPRZ1P23471 2315 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-201ENST00000313860 CACNA1BQ00975 2339 aa5.22□□□□□ -1.57
LIMCH1-201ENST00000313860 DNAH10OSP0CZ25 163 aa5.22□□□□□ -1.57
LIMCH1-201ENST00000313860 ZNF295-AS1Q8N0V1 137 aa5.21□□□□□ -1.57
LIMCH1-201ENST00000313860 IGIPA6NJ69 53 aa5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 MED12LQ86YW9 2145 aa5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 FAM218AQ96MZ4 157 aa5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 A0A1W2PNN7 141 aa5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 C18orf65Q6ZTR6 163 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 230.3 ms