RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 F8WDY8 70 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.75□□□□□ -1.49
HMGN1-201ENST00000288344 LINC00614P0C842 121 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 G0S2P27469 103 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 NDUFA5Q16718 116 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 PDZD11Q5EBL8 140 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 TEX43Q6ZNM6 134 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 VCX2Q9H322 139 aa5.75□□□□□ -1.49
HMGN1-201ENST00000288344 COLCA2A8K830 154 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 TLX1NBP0CAT3 122 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 INAFM2P0DMQ5 153 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 HNRNPA3P51991 378 aaKnown RBP5.74□□□□□ -1.49
HMGN1-201ENST00000288344 CBLN2Q8IUK8 224 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 CARD19Q96LW7 228 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 CST9LQ9H4G1 147 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 MRPL35Q9NZE8 188 aaKnown RBP5.74□□□□□ -1.49
HMGN1-201ENST00000288344 DMBT1Q9UGM3 2413 aaPredicted RBP5.74□□□□□ -1.49
HMGN1-201ENST00000288344 LINC01549A6NIU2 74 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 UNQ6190/PRO20217Q6UXQ8 127 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 KRTAP7-1Q8IUC3 87 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 SCGB3A1Q96QR1 104 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 SMCO4Q9NRQ5 59 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 CDKN2A-AS1Q9UH64 79 aa5.74□□□□□ -1.49
HMGN1-201ENST00000288344 A0A0J9YXV3 536 aa5.73□□□□□ -1.49
HMGN1-201ENST00000288344 A0A1W2PNN7 141 aa5.73□□□□□ -1.49
HMGN1-201ENST00000288344 APOMO95445 188 aa5.73□□□□□ -1.49
HMGN1-201ENST00000288344 SPAG11BQ08648 103 aa5.73□□□□□ -1.49
HMGN1-201ENST00000288344 C6orf48Q9UBA6 75 aa5.73□□□□□ -1.49
HMGN1-201ENST00000288344 TINCRA0A1B0GVN0 87 aa5.72□□□□□ -1.49
HMGN1-201ENST00000288344 PAPPA-AS1Q5QFB9 102 aa5.72□□□□□ -1.49
HMGN1-201ENST00000288344 ORAOV1Q8WV07 137 aa5.72□□□□□ -1.49
HMGN1-201ENST00000288344 CAMK2N2Q96S95 79 aa5.72□□□□□ -1.49
HMGN1-201ENST00000288344 LOC107984640A0A0U1RRK4 108 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 HERVK_113P63121 156 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 PMVKQ15126 192 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 Q6ZN92 141 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 Q6ZRP5 223 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 FA2HQ7L5A8 372 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 C2orf88Q9BSF0 95 aa5.71□□□□□ -1.5
HMGN1-201ENST00000288344 IGKV2-24A0A0C4DH68 120 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 KRTAP29-1A8MX34 341 aaPredicted RBP5.7□□□□□ -1.5
HMGN1-201ENST00000288344 SMIM1B2RUZ4 78 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 TRGC2P03986 189 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 IGLC3P0DOY3 106 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 SEC11AP67812 179 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 PMCHL1Q16048 86 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 MAJINQ3KP22 176 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 C2orf82Q6UX34 121 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 Q8IZM0 81 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 STPG4Q8N801 248 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 LINC00474Q9P2X8 69 aa5.7□□□□□ -1.5
HMGN1-201ENST00000288344 IGLV5-39A0A0G2JS06 123 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 TRBV30A0A0K0K1B3 111 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 PRYO14603 147 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 NDUFA1O15239 70 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 NUPR1O60356 82 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 HBDP02042 147 aa5.69□□□□□ -1.5
HMGN1-201ENST00000288344 SRSF9Q13242 221 aaKnown RBP eCLIP5.69□□□□□ -1.5
HMGN1-201ENST00000288344 CHCHD1Q96BP2 118 aaKnown RBP5.69□□□□□ -1.5
HMGN1-201ENST00000288344 HMCN2Q8NDA2 5059 aa5.68□□□□□ -1.5
HMGN1-201ENST00000288344 RAB5BP61020 215 aa5.68□□□□□ -1.5
HMGN1-201ENST00000288344 RPL37AP61513 92 aaKnown RBP5.68□□□□□ -1.5
HMGN1-201ENST00000288344 C9orf116Q5BN46 136 aaPredicted RBP5.68□□□□□ -1.5
HMGN1-201ENST00000288344 KRTAP11-1Q8IUC1 163 aa5.68□□□□□ -1.5
HMGN1-201ENST00000288344 ZNF22P17026 224 aaPredicted RBP5.67□□□□□ -1.5
HMGN1-201ENST00000288344 GAGE2BQ13066 116 aa5.67□□□□□ -1.5
HMGN1-201ENST00000288344 C9orf129Q5T035 196 aaKnown RBP5.67□□□□□ -1.5
HMGN1-201ENST00000288344 NDUFC2-KCTD14E9PQ53 114 aa5.66□□□□□ -1.5
HMGN1-201ENST00000288344 ATP5LO75964 103 aa5.66□□□□□ -1.5
HMGN1-201ENST00000288344 GEMIN7Q9H840 131 aaKnown RBP5.66□□□□□ -1.5
HMGN1-201ENST00000288344 PKIGQ9Y2B9 76 aa5.66□□□□□ -1.5
HMGN1-201ENST00000288344 TRAV12-1A0A0B4J245 112 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 FAM168BA1KXE4 195 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 C11orf86A6NJI1 115 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 SCO1O75880 301 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 MT1HL1P0DM35 61 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 PCP4P48539 62 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 PRR3P79522 188 aaKnown RBP5.65□□□□□ -1.51
HMGN1-201ENST00000288344 C6orf226Q5I0X4 101 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 FAM19A2Q8N3H0 131 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 LINC00469Q8N7U9 141 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 DPH3Q96FX2 82 aa5.65□□□□□ -1.51
HMGN1-201ENST00000288344 F8VRH5 84 aa5.64□□□□□ -1.51
HMGN1-201ENST00000288344 SERF1AO75920 110 aa5.64□□□□□ -1.51
HMGN1-201ENST00000288344 BAGE3Q86Y29 109 aa5.64□□□□□ -1.51
HMGN1-201ENST00000288344 OXTP01178 125 aa5.63□□□□□ -1.51
HMGN1-201ENST00000288344 SPINK8P0C7L1 97 aa5.63□□□□□ -1.51
HMGN1-201ENST00000288344 PHF5AQ7RTV0 110 aaKnown RBP5.63□□□□□ -1.51
HMGN1-201ENST00000288344 COX7B2Q8TF08 81 aa5.63□□□□□ -1.51
HMGN1-201ENST00000288344 IFI27L1Q96BM0 104 aa5.63□□□□□ -1.51
HMGN1-201ENST00000288344 CXCL5P42830 114 aa5.62□□□□□ -1.51
HMGN1-201ENST00000288344 RPL18AQ02543 176 aaKnown RBP5.62□□□□□ -1.51
HMGN1-201ENST00000288344 ZNF625Q96I27 306 aaPredicted RBP5.62□□□□□ -1.51
HMGN1-201ENST00000288344 TOMM7Q9P0U1 55 aa5.62□□□□□ -1.51
HMGN1-201ENST00000288344 TMEM223A0PJW6 202 aa5.61□□□□□ -1.51
HMGN1-201ENST00000288344 HIST1H2BKO60814 126 aa5.61□□□□□ -1.51
HMGN1-201ENST00000288344 HIST1H2BJP06899 126 aa5.61□□□□□ -1.51
HMGN1-201ENST00000288344 HIST1H2BOP23527 126 aa5.61□□□□□ -1.51
HMGN1-201ENST00000288344 HIST1H2BBP33778 126 aa5.61□□□□□ -1.51
HMGN1-201ENST00000288344 HIST1H2BDP58876 126 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms