RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 A0A096LNJ9 63 aa13.75□□□□□ -0.21
UPF1-201ENST00000262803 USP9YO00507 2555 aaPredicted RBP13.75□□□□□ -0.21
UPF1-201ENST00000262803 ZFYVE26Q68DK2 2539 aa13.74□□□□□ -0.21
UPF1-201ENST00000262803 A0A1W2PPR1 153 aa13.74□□□□□ -0.21
UPF1-201ENST00000262803 SMIM1B2RUZ4 78 aa13.74□□□□□ -0.21
UPF1-201ENST00000262803 FHL2Q14192 279 aa13.74□□□□□ -0.21
UPF1-201ENST00000262803 HRCT1Q6UXD1 115 aa13.73□□□□□ -0.21
UPF1-201ENST00000262803 ANKRD11Q6UB99 2663 aaPredicted RBP13.72□□□□□ -0.21
UPF1-201ENST00000262803 C1orf134Q5TEV5 83 aa13.72□□□□□ -0.21
UPF1-201ENST00000262803 CPAMD8Q8IZJ3 1885 aa13.72□□□□□ -0.21
UPF1-201ENST00000262803 C1orf137Q5JT78 98 aa13.71□□□□□ -0.21
UPF1-201ENST00000262803 TSPEAR-AS2P59090 65 aa13.71□□□□□ -0.21
UPF1-201ENST00000262803 MPLKIPQ8TAP9 179 aa13.71□□□□□ -0.21
UPF1-201ENST00000262803 UNQ6190/PRO20217Q6UXQ8 127 aa13.71□□□□□ -0.22
UPF1-201ENST00000262803 COX7CP15954 63 aa13.7□□□□□ -0.22
UPF1-201ENST00000262803 Q8N814 137 aa13.7□□□□□ -0.22
UPF1-201ENST00000262803 Q6Q795 121 aa13.7□□□□□ -0.22
UPF1-201ENST00000262803 FN1P02751 2386 aaKnown RBP13.7□□□□□ -0.22
UPF1-201ENST00000262803 LIMD2Q9BT23 127 aa13.69□□□□□ -0.22
UPF1-201ENST00000262803 COL5A1P20908 1838 aaPredicted RBP13.69□□□□□ -0.22
UPF1-201ENST00000262803 Q6ZVQ6 151 aa13.69□□□□□ -0.22
UPF1-201ENST00000262803 C6orf223Q8N319 242 aa13.68□□□□□ -0.22
UPF1-201ENST00000262803 AMELXQ99217 191 aa13.68□□□□□ -0.22
UPF1-201ENST00000262803 TRBV10-3A0A0K0K1G6 114 aa13.67□□□□□ -0.22
UPF1-201ENST00000262803 TRAV7A0A075B6U4 112 aa13.66□□□□□ -0.22
UPF1-201ENST00000262803 Q6ZTC4 211 aa13.66□□□□□ -0.22
UPF1-201ENST00000262803 KRTAP10-9P60411 292 aa13.66□□□□□ -0.22
UPF1-201ENST00000262803 Q8N2B8 174 aa13.66□□□□□ -0.22
UPF1-201ENST00000262803 LINC00694P0DN24 101 aa13.65□□□□□ -0.22
UPF1-201ENST00000262803 COX6A2Q02221 97 aa13.65□□□□□ -0.22
UPF1-201ENST00000262803 CCDC179H3BU77 68 aa13.65□□□□□ -0.22
UPF1-201ENST00000262803 RAI1Q7Z5J4 1906 aaPredicted RBP13.64□□□□□ -0.23
UPF1-201ENST00000262803 A6NED7 52 aa13.63□□□□□ -0.23
UPF1-201ENST00000262803 ESRGQ1W209 222 aa13.63□□□□□ -0.23
UPF1-201ENST00000262803 ADAMTSL4-AS1Q5T5F5 129 aa13.63□□□□□ -0.23
UPF1-201ENST00000262803 RETNQ9HD89 108 aa13.62□□□□□ -0.23
UPF1-201ENST00000262803 IGLV4-60A0A075B6I1 120 aa13.62□□□□□ -0.23
UPF1-201ENST00000262803 CIRBP-AS1Q8TBR5 109 aa13.62□□□□□ -0.23
UPF1-201ENST00000262803 SNURFQ9Y675 71 aa13.62□□□□□ -0.23
UPF1-201ENST00000262803 LYPD5Q6UWN5 251 aa13.61□□□□□ -0.23
UPF1-201ENST00000262803 SMR3AQ99954 134 aa13.6□□□□□ -0.23
UPF1-201ENST00000262803 Q9BRP9 147 aa13.6□□□□□ -0.23
UPF1-201ENST00000262803 PKD1L2Q7Z442 2459 aa13.6□□□□□ -0.23
UPF1-201ENST00000262803 C9orf116Q5BN46 136 aaPredicted RBP13.59□□□□□ -0.23
UPF1-201ENST00000262803 LINC01556Q5JQF7 62 aa13.58□□□□□ -0.23
UPF1-201ENST00000262803 FAM30AQ9NZY2 134 aa13.58□□□□□ -0.24
UPF1-201ENST00000262803 EXPH5Q8NEV8 1989 aa13.57□□□□□ -0.24
UPF1-201ENST00000262803 Q6ZSN1 163 aa13.57□□□□□ -0.24
UPF1-201ENST00000262803 SMIM26A0A096LP01 95 aa13.56□□□□□ -0.24
UPF1-201ENST00000262803 PRR3P79522 188 aaKnown RBP13.55□□□□□ -0.24
UPF1-201ENST00000262803 A0A087WYN8 130 aa13.53□□□□□ -0.24
UPF1-201ENST00000262803 IGHV6-1A0A0B4J1U7 121 aa13.53□□□□□ -0.24
UPF1-201ENST00000262803 FHL3Q13643 280 aa13.52□□□□□ -0.25
UPF1-201ENST00000262803 H3BNG1 76 aa13.52□□□□□ -0.25
UPF1-201ENST00000262803 LINC00208Q96KT6 92 aa13.51□□□□□ -0.25
UPF1-201ENST00000262803 LRRK2Q5S007 2527 aa13.51□□□□□ -0.25
UPF1-201ENST00000262803 ADAMTS20P59510 1910 aa13.51□□□□□ -0.25
UPF1-201ENST00000262803 KIF25-AS1Q9Y6Z4 181 aa13.51□□□□□ -0.25
UPF1-201ENST00000262803 CHD8Q9HCK8 2581 aa13.5□□□□□ -0.25
UPF1-201ENST00000262803 AGRNO00468 2067 aa13.49□□□□□ -0.25
UPF1-201ENST00000262803 SPTBN4Q9H254 2564 aa13.49□□□□□ -0.25
UPF1-201ENST00000262803 PRR4Q16378 134 aa13.49□□□□□ -0.25
UPF1-201ENST00000262803 TET2Q6N021 2002 aaPredicted RBP13.49□□□□□ -0.25
UPF1-201ENST00000262803 A0A087WVE0 104 aa13.49□□□□□ -0.25
UPF1-201ENST00000262803 A0A1B0GW54 56 aa13.48□□□□□ -0.25
UPF1-201ENST00000262803 LINC00575Q6W349 94 aa13.48□□□□□ -0.25
UPF1-201ENST00000262803 TRBV7-6A0A0J9YX20 115 aa13.47□□□□□ -0.25
UPF1-201ENST00000262803 MTORP42345 2549 aa13.45□□□□□ -0.26
UPF1-201ENST00000262803 CELA1Q9UNI1 258 aa13.44□□□□□ -0.26
UPF1-201ENST00000262803 LINC01547P58512 204 aaPredicted RBP13.44□□□□□ -0.26
UPF1-201ENST00000262803 A0A087WSZ3 146 aa13.44□□□□□ -0.26
UPF1-201ENST00000262803 A0A0U1RQV1 116 aa13.44□□□□□ -0.26
UPF1-201ENST00000262803 hDV103S1A0JD37 113 aa13.44□□□□□ -0.26
UPF1-201ENST00000262803 Q6ZRU5 148 aa13.42□□□□□ -0.26
UPF1-201ENST00000262803 HCG22E2RYF7 251 aa13.41□□□□□ -0.26
UPF1-201ENST00000262803 LINC01546A6NGU7 62 aa13.41□□□□□ -0.26
UPF1-201ENST00000262803 H0Y9P7 68 aa13.4□□□□□ -0.26
UPF1-201ENST00000262803 CXCL6P80162 114 aa13.4□□□□□ -0.26
UPF1-201ENST00000262803 TRBV7-7A0A0K0K1E9 115 aa13.4□□□□□ -0.26
UPF1-201ENST00000262803 C22orf24Q9Y442 160 aa13.39□□□□□ -0.27
UPF1-201ENST00000262803 Q8N3U1 123 aa13.39□□□□□ -0.27
UPF1-201ENST00000262803 LINC00315P59091 139 aa13.39□□□□□ -0.27
UPF1-201ENST00000262803 LINC00337Q8N6G1 96 aa13.39□□□□□ -0.27
UPF1-201ENST00000262803 C11orf72Q8NBR9 251 aa13.38□□□□□ -0.27
UPF1-201ENST00000262803 SMCR5Q8TEV8 140 aa13.38□□□□□ -0.27
UPF1-201ENST00000262803 IGLV5-39A0A0G2JS06 123 aa13.38□□□□□ -0.27
UPF1-201ENST00000262803 TP53AIP1Q9HCN2 124 aa13.37□□□□□ -0.27
UPF1-201ENST00000262803 MDFIQ99750 246 aa13.35□□□□□ -0.27
UPF1-201ENST00000262803 FAM19A4Q96LR4 140 aa13.34□□□□□ -0.27
UPF1-201ENST00000262803 ZNF462Q96JM2 2506 aa13.33□□□□□ -0.27
UPF1-201ENST00000262803 A8MTW9 85 aa13.32□□□□□ -0.28
UPF1-201ENST00000262803 LINC00846Q9NV44 126 aa13.32□□□□□ -0.28
UPF1-201ENST00000262803 BCE1O60756 84 aa13.32□□□□□ -0.28
UPF1-201ENST00000262803 POLQO75417 2590 aa13.31□□□□□ -0.28
UPF1-201ENST00000262803 CDIP1Q9H305 208 aa13.31□□□□□ -0.28
UPF1-201ENST00000262803 IGHV3OR16-9A0A0B4J2B5 98 aa13.29□□□□□ -0.28
UPF1-201ENST00000262803 PRLHP81277 87 aa13.28□□□□□ -0.28
UPF1-201ENST00000262803 FAM229AH3BQW9 127 aa13.28□□□□□ -0.28
UPF1-201ENST00000262803 X6R8D5 127 aa13.28□□□□□ -0.28
UPF1-201ENST00000262803 C1orf195Q5TG92 126 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms