RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 A8MTW9 85 aa10.13□□□□□ -0.79
SDC1-201ENST00000254351 C6orf226Q5I0X4 101 aa10.13□□□□□ -0.79
SDC1-201ENST00000254351 STHQ8IWL8 128 aa10.13□□□□□ -0.79
SDC1-201ENST00000254351 WFDC10AQ9H1F0 79 aa10.12□□□□□ -0.79
SDC1-201ENST00000254351 C1orf158Q8N1D5 194 aa10.11□□□□□ -0.79
SDC1-201ENST00000254351 UPK3BQ9BT76 320 aa10.11□□□□□ -0.79
SDC1-201ENST00000254351 ORMDL1Q9P0S3 153 aa10.11□□□□□ -0.79
SDC1-201ENST00000254351 TMEM258P61165 79 aa10.11□□□□□ -0.79
SDC1-201ENST00000254351 Q6JHZ5 121 aa10.11□□□□□ -0.79
SDC1-201ENST00000254351 RPL35AP18077 110 aaKnown RBP10.1□□□□□ -0.79
SDC1-201ENST00000254351 SNURFQ9Y675 71 aa10.09□□□□□ -0.79
SDC1-201ENST00000254351 B4DSR2 109 aa10.09□□□□□ -0.79
SDC1-201ENST00000254351 TRGV4A0A0C4DH28 118 aa10.08□□□□□ -0.8
SDC1-201ENST00000254351 SS18Q15532 418 aa10.08□□□□□ -0.8
SDC1-201ENST00000254351 ACANP16112 2415 aa10.07□□□□□ -0.8
SDC1-201ENST00000254351 H0YGX0 51 aa10.07□□□□□ -0.8
SDC1-201ENST00000254351 PF4P02776 101 aa10.07□□□□□ -0.8
SDC1-201ENST00000254351 HAMPP81172 84 aa10.07□□□□□ -0.8
SDC1-201ENST00000254351 C9orf116Q5BN46 136 aaPredicted RBP10.07□□□□□ -0.8
SDC1-201ENST00000254351 ODF3L2Q3SX64 289 aa10.07□□□□□ -0.8
SDC1-201ENST00000254351 IGLV10-54A0A075B6I4 117 aa10.06□□□□□ -0.8
SDC1-201ENST00000254351 DEFB130BP0DP73 79 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 DEFB130AP0DP74 79 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 Q5XG85 94 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 ZNF702PQ9H963 129 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 TENM4Q6N022 2769 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 RPS28P62857 69 aaKnown RBP10.05□□□□□ -0.8
SDC1-201ENST00000254351 SCXQ7RTU7 201 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 CCKP06307 115 aa10.05□□□□□ -0.8
SDC1-201ENST00000254351 M0R2N4 97 aa10.04□□□□□ -0.8
SDC1-201ENST00000254351 DEFB114Q30KQ6 69 aa10.04□□□□□ -0.8
SDC1-201ENST00000254351 OVOL2Q9BRP0 275 aa10.04□□□□□ -0.8
SDC1-201ENST00000254351 IGHV3OR16-9A0A0B4J2B5 98 aa10.02□□□□□ -0.8
SDC1-201ENST00000254351 LAMTOR3Q9UHA4 124 aa10.02□□□□□ -0.8
SDC1-201ENST00000254351 ZNF469Q96JG9 3925 aaPredicted RBP10.02□□□□□ -0.8
SDC1-201ENST00000254351 TRBV6-4A0A1B0GX49 114 aa10.02□□□□□ -0.81
SDC1-201ENST00000254351 KRTAP10-9P60411 292 aa10.02□□□□□ -0.81
SDC1-201ENST00000254351 TRAV25A0A0B4J276 109 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 SPATA3Q8NHX4 192 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 ESM1Q9NQ30 184 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 HELZ2Q9BYK8 2649 aaKnown RBP10.01□□□□□ -0.81
SDC1-201ENST00000254351 HIVEP2P31629 2446 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 C6orf99Q4VX62 202 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 UBL5Q9BZL1 73 aa10.01□□□□□ -0.81
SDC1-201ENST00000254351 WFDC11Q8NEX6 87 aa10□□□□□ -0.81
SDC1-201ENST00000254351 DSCR9P59020 149 aa10□□□□□ -0.81
SDC1-201ENST00000254351 TMEM86BQ8N661 226 aa10□□□□□ -0.81
SDC1-201ENST00000254351 Q8N814 137 aa10□□□□□ -0.81
SDC1-201ENST00000254351 OBSCN-AS1Q96MR7 158 aa10□□□□□ -0.81
SDC1-201ENST00000254351 IBA57-AS1B1ANH7 110 aa10□□□□□ -0.81
SDC1-201ENST00000254351 RMI2Q96E14 147 aa10□□□□□ -0.81
SDC1-201ENST00000254351 A0A096LNT2 108 aa9.99□□□□□ -0.81
SDC1-201ENST00000254351 TRBV10-1A0A0K0K1A3 114 aa9.99□□□□□ -0.81
SDC1-201ENST00000254351 Q8N3U1 123 aa9.99□□□□□ -0.81
SDC1-201ENST00000254351 TRAV10A0A0B4J240 114 aa9.98□□□□□ -0.81
SDC1-201ENST00000254351 FAM236DA0A1B0GTK5 79 aa9.98□□□□□ -0.81
SDC1-201ENST00000254351 FAM236CP0DP71 79 aa9.98□□□□□ -0.81
SDC1-201ENST00000254351 LINC00269Q8N2A0 174 aa9.98□□□□□ -0.81
SDC1-201ENST00000254351 TRBV6-8A0A0A6YYG3 113 aa9.98□□□□□ -0.81
SDC1-201ENST00000254351 LINC00959A0A1B0GUT2 108 aa9.97□□□□□ -0.81
SDC1-201ENST00000254351 FAM19A3Q7Z5A8 133 aa9.97□□□□□ -0.81
SDC1-201ENST00000254351 DEFB113Q30KQ7 82 aa9.96□□□□□ -0.81
SDC1-201ENST00000254351 S100A7L2Q5SY68 101 aa9.96□□□□□ -0.81
SDC1-201ENST00000254351 PKIGQ9Y2B9 76 aa9.96□□□□□ -0.81
SDC1-201ENST00000254351 A0A087WZ39 114 aa9.96□□□□□ -0.82
SDC1-201ENST00000254351 LINC00336Q6ZUF6 198 aa9.96□□□□□ -0.82
SDC1-201ENST00000254351 NANOS2P60321 138 aaKnown RBP9.96□□□□□ -0.82
SDC1-201ENST00000254351 C1orf43Q9BWL3 253 aa9.96□□□□□ -0.82
SDC1-201ENST00000254351 LINC01356Q8N9X3 169 aa9.95□□□□□ -0.82
SDC1-201ENST00000254351 Q8NDZ9 215 aa9.95□□□□□ -0.82
SDC1-201ENST00000254351 TMEM256-PLSCR3K7ERE1 68 aa9.94□□□□□ -0.82
SDC1-201ENST00000254351 JMJD7-PLA2G4BH0Y9G9 81 aa9.93□□□□□ -0.82
SDC1-201ENST00000254351 CR1P17927 2039 aa9.93□□□□□ -0.82
SDC1-201ENST00000254351 F8WEM9 126 aa9.93□□□□□ -0.82
SDC1-201ENST00000254351 LINC00474Q9P2X8 69 aa9.93□□□□□ -0.82
SDC1-201ENST00000254351 RBM3P98179 157 aaKnown RBP9.92□□□□□ -0.82
SDC1-201ENST00000254351 FLNAP21333 2647 aaKnown RBP9.92□□□□□ -0.82
SDC1-201ENST00000254351 DEFB4AO15263 64 aa9.92□□□□□ -0.82
SDC1-201ENST00000254351 ITPR3Q14573 2671 aa9.92□□□□□ -0.82
SDC1-201ENST00000254351 GYPEP15421 78 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 Q6YL49 198 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 A0A0U1RQV1 116 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 H7BZZ5 65 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 C6orf223Q8N319 242 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 Q8N9L7 120 aa9.91□□□□□ -0.82
SDC1-201ENST00000254351 NDUFC2O95298 119 aa9.9□□□□□ -0.82
SDC1-201ENST00000254351 LINC01547P58512 204 aaPredicted RBP9.9□□□□□ -0.82
SDC1-201ENST00000254351 GIG44P09565 113 aaPredicted RBP9.9□□□□□ -0.82
SDC1-201ENST00000254351 C4orf3Q8WVX3 66 aa9.9□□□□□ -0.82
SDC1-201ENST00000254351 PLAC8L1A1L4L8 177 aa9.89□□□□□ -0.83
SDC1-201ENST00000254351 Q6ZQY7 126 aa9.89□□□□□ -0.83
SDC1-201ENST00000254351 IL17DQ8TAD2 202 aa9.89□□□□□ -0.83
SDC1-201ENST00000254351 TM2D3Q9BRN9 247 aa9.89□□□□□ -0.83
SDC1-201ENST00000254351 LYPD5Q6UWN5 251 aa9.88□□□□□ -0.83
SDC1-201ENST00000254351 KRTAP1-3Q8IUG1 177 aa9.88□□□□□ -0.83
SDC1-201ENST00000254351 MPLKIPQ8TAP9 179 aa9.88□□□□□ -0.83
SDC1-201ENST00000254351 Q6ZVQ6 151 aa9.87□□□□□ -0.83
SDC1-201ENST00000254351 CCL24O00175 119 aa9.87□□□□□ -0.83
SDC1-201ENST00000254351 LY6G6DO95868 133 aa9.87□□□□□ -0.83
SDC1-201ENST00000254351 ANGP03950 147 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms