RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KRTAP10-11P60412 298 aa9.41□□□□□ -0.9
LDLR-201ENST00000252444 CCDC168Q8NDH2 2452 aa9.4□□□□□ -0.9
LDLR-201ENST00000252444 BPY2O14599 106 aa9.39□□□□□ -0.91
LDLR-201ENST00000252444 C10orf25Q5T742 122 aa9.39□□□□□ -0.91
LDLR-201ENST00000252444 FAM240AA0A1B0GVK7 77 aa9.39□□□□□ -0.91
LDLR-201ENST00000252444 ANKRD17O75179 2603 aaKnown RBP9.39□□□□□ -0.91
LDLR-201ENST00000252444 TEX49A0A1B0GTD5 131 aa9.39□□□□□ -0.91
LDLR-201ENST00000252444 IMUPQ9GZP8 106 aa9.38□□□□□ -0.91
LDLR-201ENST00000252444 TSPEAR-AS2P59090 65 aa9.38□□□□□ -0.91
LDLR-201ENST00000252444 LINC00588Q9Y4M8 146 aa9.37□□□□□ -0.91
LDLR-201ENST00000252444 WFDC2Q14508 124 aa9.37□□□□□ -0.91
LDLR-201ENST00000252444 Q8N814 137 aa9.37□□□□□ -0.91
LDLR-201ENST00000252444 Q6ZRU5 148 aa9.37□□□□□ -0.91
LDLR-201ENST00000252444 Q6ZQY7 126 aa9.36□□□□□ -0.91
LDLR-201ENST00000252444 TRBV10-3A0A0K0K1G6 114 aa9.36□□□□□ -0.91
LDLR-201ENST00000252444 GIG44P09565 113 aaPredicted RBP9.36□□□□□ -0.91
LDLR-201ENST00000252444 NDUFV3P56181 108 aaKnown RBP9.35□□□□□ -0.91
LDLR-201ENST00000252444 CHD9Q3L8U1 2897 aa9.35□□□□□ -0.91
LDLR-201ENST00000252444 MYO18BQ8IUG5 2567 aa9.35□□□□□ -0.91
LDLR-201ENST00000252444 J3KT08 172 aa9.35□□□□□ -0.91
LDLR-201ENST00000252444 IGKV2-28A0A075B6P5 120 aa9.35□□□□□ -0.91
LDLR-201ENST00000252444 IGKV2D-28P01615 120 aa9.35□□□□□ -0.91
LDLR-201ENST00000252444 PRR34Q9NV39 138 aa9.34□□□□□ -0.91
LDLR-201ENST00000252444 C14orf132Q9NPU4 83 aa9.34□□□□□ -0.91
LDLR-201ENST00000252444 TRANK1O15050 2925 aa9.34□□□□□ -0.91
LDLR-201ENST00000252444 C16orf90A8MZG2 172 aa9.33□□□□□ -0.92
LDLR-201ENST00000252444 NDUFS5O43920 106 aa9.33□□□□□ -0.92
LDLR-201ENST00000252444 LINC00336Q6ZUF6 198 aa9.32□□□□□ -0.92
LDLR-201ENST00000252444 LIMD2Q9BT23 127 aa9.32□□□□□ -0.92
LDLR-201ENST00000252444 SONP18583 2426 aaKnown RBP9.32□□□□□ -0.92
LDLR-201ENST00000252444 SORL1Q92673 2214 aa9.32□□□□□ -0.92
LDLR-201ENST00000252444 CCKP06307 115 aa9.3□□□□□ -0.92
LDLR-201ENST00000252444 LINC00575Q6W349 94 aa9.3□□□□□ -0.92
LDLR-201ENST00000252444 ENHOQ6UWT2 76 aa9.3□□□□□ -0.92
LDLR-201ENST00000252444 LINC00526Q96FQ7 95 aa9.3□□□□□ -0.92
LDLR-201ENST00000252444 CHD8Q9HCK8 2581 aa9.29□□□□□ -0.92
LDLR-201ENST00000252444 ADAMTSL4-AS1Q5T5F5 129 aa9.29□□□□□ -0.92
LDLR-201ENST00000252444 PLA2G2DQ9UNK4 145 aa9.29□□□□□ -0.92
LDLR-201ENST00000252444 H0Y9J4 135 aa9.29□□□□□ -0.92
LDLR-201ENST00000252444 CR1P17927 2039 aa9.28□□□□□ -0.92
LDLR-201ENST00000252444 C6orf48Q9UBA6 75 aa9.28□□□□□ -0.92
LDLR-201ENST00000252444 C22orf24Q9Y442 160 aa9.28□□□□□ -0.92
LDLR-201ENST00000252444 TLX1NBP0CAT3 122 aa9.28□□□□□ -0.92
LDLR-201ENST00000252444 WNK1Q9H4A3 2382 aa9.27□□□□□ -0.93
LDLR-201ENST00000252444 AGRNO00468 2067 aa9.27□□□□□ -0.93
LDLR-201ENST00000252444 C9orf116Q5BN46 136 aaPredicted RBP9.27□□□□□ -0.93
LDLR-201ENST00000252444 RTL8CO15255 209 aa9.25□□□□□ -0.93
LDLR-201ENST00000252444 C1orf137Q5JT78 98 aa9.25□□□□□ -0.93
LDLR-201ENST00000252444 LRRK2Q5S007 2527 aa9.24□□□□□ -0.93
LDLR-201ENST00000252444 Q6ZRP5 223 aa9.23□□□□□ -0.93
LDLR-201ENST00000252444 APLNQ9ULZ1 77 aa9.23□□□□□ -0.93
LDLR-201ENST00000252444 KRTAP21-3Q3LHN1 58 aa9.22□□□□□ -0.93
LDLR-201ENST00000252444 SLPIP03973 132 aa9.22□□□□□ -0.93
LDLR-201ENST00000252444 ELOF1P60002 83 aaKnown RBP9.22□□□□□ -0.93
LDLR-201ENST00000252444 Q6Q795 121 aa9.22□□□□□ -0.93
LDLR-201ENST00000252444 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.93
LDLR-201ENST00000252444 ATP5EP56381 51 aaPredicted RBP9.21□□□□□ -0.94
LDLR-201ENST00000252444 Q9BRP9 147 aa9.21□□□□□ -0.94
LDLR-201ENST00000252444 NDUFC1O43677 76 aa9.2□□□□□ -0.94
LDLR-201ENST00000252444 LINC00337Q8N6G1 96 aa9.2□□□□□ -0.94
LDLR-201ENST00000252444 TMEM258P61165 79 aa9.2□□□□□ -0.94
LDLR-201ENST00000252444 FAM229AH3BQW9 127 aa9.18□□□□□ -0.94
LDLR-201ENST00000252444 FAM236AA0A1B0GUQ0 79 aa9.18□□□□□ -0.94
LDLR-201ENST00000252444 FAM236BA0A1B0GV22 79 aa9.18□□□□□ -0.94
LDLR-201ENST00000252444 PLA2G1BP04054 148 aaKnown RBP9.18□□□□□ -0.94
LDLR-201ENST00000252444 CNBPP62633 177 aaKnown RBP9.18□□□□□ -0.94
LDLR-201ENST00000252444 LINC00167Q96N53 147 aa9.18□□□□□ -0.94
LDLR-201ENST00000252444 LRCOL1A6NCL2 159 aa9.17□□□□□ -0.94
LDLR-201ENST00000252444 CHD7Q9P2D1 2997 aa9.17□□□□□ -0.94
LDLR-201ENST00000252444 BCE1O60756 84 aa9.17□□□□□ -0.94
LDLR-201ENST00000252444 RPL37AP61513 92 aaKnown RBP9.16□□□□□ -0.94
LDLR-201ENST00000252444 USP9XQ93008 2570 aaPredicted RBP9.16□□□□□ -0.94
LDLR-201ENST00000252444 SMCR5Q8TEV8 140 aa9.16□□□□□ -0.94
LDLR-201ENST00000252444 HTTP42858 3142 aa9.16□□□□□ -0.94
LDLR-201ENST00000252444 Q6ZRX8 168 aa9.16□□□□□ -0.94
LDLR-201ENST00000252444 A0A087WYN8 130 aa9.15□□□□□ -0.94
LDLR-201ENST00000252444 ABCA12Q86UK0 2595 aa9.14□□□□□ -0.95
LDLR-201ENST00000252444 IGLV6-57P01721 117 aa9.14□□□□□ -0.95
LDLR-201ENST00000252444 IGLV9-49A0A0B4J1Y8 123 aa9.14□□□□□ -0.95
LDLR-201ENST00000252444 Q8NBF4 154 aa9.14□□□□□ -0.95
LDLR-201ENST00000252444 ZNF575Q86XF7 245 aa9.12□□□□□ -0.95
LDLR-201ENST00000252444 VPREB1P12018 145 aa9.12□□□□□ -0.95
LDLR-201ENST00000252444 KCNQ1DNQ9H478 68 aa9.12□□□□□ -0.95
LDLR-201ENST00000252444 CHKB-CPT1BH3BT56 60 aa9.12□□□□□ -0.95
LDLR-201ENST00000252444 UQCRQO14949 82 aa9.12□□□□□ -0.95
LDLR-201ENST00000252444 IGLV5-37A0A075B6J1 123 aa9.11□□□□□ -0.95
LDLR-201ENST00000252444 LOC110117498A0A087WWA1 95 aa9.11□□□□□ -0.95
LDLR-201ENST00000252444 CXCL6P80162 114 aa9.11□□□□□ -0.95
LDLR-201ENST00000252444 LITAFQ99732 161 aa9.11□□□□□ -0.95
LDLR-201ENST00000252444 MYO9AB2RTY4 2548 aa9.1□□□□□ -0.95
LDLR-201ENST00000252444 WDR87Q6ZQQ6 2873 aa9.1□□□□□ -0.95
LDLR-201ENST00000252444 C9orf163Q8N9P6 203 aa9.1□□□□□ -0.95
LDLR-201ENST00000252444 KIAA0087Q14695 138 aa9.09□□□□□ -0.95
LDLR-201ENST00000252444 A0A087WTM6 91 aa9.09□□□□□ -0.95
LDLR-201ENST00000252444 C15orf56Q8N910 161 aa9.09□□□□□ -0.95
LDLR-201ENST00000252444 Q9UF83 564 aa9.09□□□□□ -0.95
LDLR-201ENST00000252444 USP9YO00507 2555 aaPredicted RBP9.09□□□□□ -0.95
LDLR-201ENST00000252444 ABCA2Q9BZC7 2435 aa9.08□□□□□ -0.96
LDLR-201ENST00000252444 PRR3P79522 188 aaKnown RBP9.07□□□□□ -0.96
LDLR-201ENST00000252444 EPG5Q9HCE0 2579 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms