RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NANOS2P60321 138 aaKnown RBP4.14□□□□□ -1.75
SCN1A-216ENST00000637968 SYCNQ0VAF6 134 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 ZFAND2AQ8N6M9 145 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 MUC22E2RYF6 1773 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-216ENST00000637968 CHD8Q9HCK8 2581 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 TRBV6-8A0A0A6YYG3 113 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 PRR9Q5T870 116 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 OBSCN-AS1Q96MR7 158 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 CYP4F30PQ9H0H9 118 aa4.13□□□□□ -1.75
SCN1A-216ENST00000637968 IGHV3-38A0A0C4DH36 116 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 TRBV7-4A0A0J9YYF1 115 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 RNF223E7ERA6 249 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 Q6ZTI0 123 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 LINC00337Q8N6G1 96 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 Q8N814 137 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 BBC3Q96PG8 261 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-216ENST00000637968 CASC2Q6XLA1 102 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 C1orf64Q8NEQ6 169 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 CCDC140Q96MF4 163 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 MINOS1Q5TGZ0 78 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 MINOS1-NBL1R4GNA1 71 aa4.12□□□□□ -1.75
SCN1A-216ENST00000637968 C9orf129Q5T035 196 aaKnown RBP4.11□□□□□ -1.75
SCN1A-216ENST00000637968 C11orf72Q8NBR9 251 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 TRGV4A0A0C4DH28 118 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 MSMBP08118 114 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 LTBP2Q14767 1821 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 WNK1Q9H4A3 2382 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 LRP4O75096 1905 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 HTN3P15516 51 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 FAM30AQ9NZY2 134 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 CELA1Q9UNI1 258 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 HIVEP2P31629 2446 aa4.11□□□□□ -1.75
SCN1A-216ENST00000637968 KIF25-AS1Q9Y6Z4 181 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 CMC4P56277 68 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-216ENST00000637968 DEFB113Q30KQ7 82 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 HIGD2BQ4VC39 106 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 Q6ZRP5 223 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 DIRC1Q969H9 104 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 LINC00467Q9BRT7 94 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 FAM215AQ9Y5M1 114 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 CLPSL1A2RUU4 121 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 CCL18P55774 89 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 MALRD1Q5VYJ5 2156 aa4.1□□□□□ -1.75
SCN1A-216ENST00000637968 LYPD2Q6UXB3 125 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 SONP18583 2426 aaKnown RBP4.09□□□□□ -1.75
SCN1A-216ENST00000637968 SMIM1B2RUZ4 78 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 IGLV1-44P01699 117 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 LINC00315P59091 139 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 Q6ZQT0 140 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 MYO18BQ8IUG5 2567 aa4.09□□□□□ -1.75
SCN1A-216ENST00000637968 TRBV6-4A0A1B0GX49 114 aa4.09□□□□□ -1.76
SCN1A-216ENST00000637968 PHF5AQ7RTV0 110 aaKnown RBP4.09□□□□□ -1.76
SCN1A-216ENST00000637968 IGF2RP11717 2491 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 LOC110117498A0A087WWA1 95 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 IGHV3-16A0A0C4DH30 117 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 IGLV5-39A0A0G2JS06 123 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 C22orf24Q9Y442 160 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 ANKHD1Q8IWZ3 2542 aaKnown RBP4.08□□□□□ -1.76
SCN1A-216ENST00000637968 PRM2P04554 102 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 CSPG4Q6UVK1 2322 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 TRGV1A0A0A0MS02 117 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 Q6ZTC4 211 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 NPBQ8NG41 125 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 B9D2Q9BPU9 175 aa4.08□□□□□ -1.76
SCN1A-216ENST00000637968 PSCAO43653 123 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 C9orf116Q5BN46 136 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-216ENST00000637968 RHPN1-AS1Q9BWJ2 59 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 UTRNP46939 3433 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 PCNTO95613 3336 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 IGLV3-9A0A075B6K5 115 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 H3BUX3 64 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 INSP01308 110 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 DEFB1P60022 68 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 C6orf99Q4VX62 202 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 LINC00242Q5T6M2 205 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 ZNF843Q8N446 348 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 LINC00208Q96KT6 92 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 CCL24O00175 119 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 IGHV3-53P01767 116 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 SPINK13Q1W4C9 94 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 MRGPRG-AS1Q2M3A8 158 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 ZNF575Q86XF7 245 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 WFDC10AQ9H1F0 79 aa4.07□□□□□ -1.76
SCN1A-216ENST00000637968 IGLV5-45A0A087WSX0 123 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 A0A1W2PNU3 283 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-216ENST00000637968 ATP6V0E1O15342 81 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 IGLV1-47P01700 117 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 COX6A2Q02221 97 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 FBXL19-AS1Q494R0 122 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 LINC01554Q52M75 96 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 PRR26Q8N8Z3 221 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 USMG5Q96IX5 58 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 ETDCA0A1B0GVM5 59 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 C16orf90A8MZG2 172 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 MUC7Q8TAX7 377 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 CCDC168Q8NDH2 2452 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 NDUFA4O00483 81 aa4.06□□□□□ -1.76
SCN1A-216ENST00000637968 NAV2Q8IVL1 2488 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 K7EQD1 137 aa4.05□□□□□ -1.76
SCN1A-216ENST00000637968 LY6HO94772 140 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms