RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 EREGO14944 169 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 SMIM6P0DI80 62 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 UBE2D1P51668 147 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 KRTAP10-2P60368 255 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 Q8N976 141 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 UBE2WQ96B02 151 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 OPRPNQ99935 248 aaPredicted RBP6.57□□□□□ -1.36
CLN3-261ENST00000637686 TM2D2Q9BX73 214 aa6.57□□□□□ -1.36
CLN3-261ENST00000637686 CHTOPQ9Y3Y2 248 aaKnown RBP6.57□□□□□ -1.36
CLN3-261ENST00000637686 IGLV4-69A0A075B6H9 119 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 IGLV5-45A0A087WSX0 123 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 C16orf90A8MZG2 172 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 DPM2O94777 84 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 ANGP03950 147 aaKnown RBP6.56□□□□□ -1.36
CLN3-261ENST00000637686 FUSP35637 526 aaKnown RBP eCLIP6.56□□□□□ -1.36
CLN3-261ENST00000637686 HERVK_113P63121 156 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 MIAQ16674 131 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 PYY3Q5JQD4 70 aa6.56□□□□□ -1.36
CLN3-261ENST00000637686 MRPL35Q9NZE8 188 aaKnown RBP6.56□□□□□ -1.36
CLN3-261ENST00000637686 IGKV2D-24A0A075B6R9 120 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 LINC00959A0A1B0GUT2 108 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 LRCOL1A6NCL2 159 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 SCGB1D1O95968 90 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 IGKCP01834 107 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 REG3AQ06141 175 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 SS18Q15532 418 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 ENHOQ6UWT2 76 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 LINC01561Q8N1V8 128 aa6.55□□□□□ -1.36
CLN3-261ENST00000637686 C11orf86A6NJI1 115 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 CRPP02741 224 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 LINC00242Q5T6M2 205 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 CLPSL2Q6UWE3 100 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 LINC00269Q8N2A0 174 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 MAPKAPK5-AS1Q8N8E1 139 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 RMI2Q96E14 147 aa6.54□□□□□ -1.36
CLN3-261ENST00000637686 CD164L2Q6UWJ8 174 aa6.53□□□□□ -1.36
CLN3-261ENST00000637686 CHAC1Q9BUX1 264 aa6.53□□□□□ -1.36
CLN3-261ENST00000637686 GEMIN7Q9H840 131 aaKnown RBP6.53□□□□□ -1.36
CLN3-261ENST00000637686 PGPEP1Q9NXJ5 209 aa6.53□□□□□ -1.36
CLN3-261ENST00000637686 COX11Q9Y6N1 276 aa6.53□□□□□ -1.36
CLN3-261ENST00000637686 TRAV13-1A0A0B4J241 112 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 IGHV3OR16-9A0A0B4J2B5 98 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 A0A0J9YXV3 536 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 H0Y8G0 127 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 H3BRM9 83 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 LECT2O14960 151 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 WFDC2Q14508 124 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 RNASE13Q5GAN3 156 aaKnown RBP6.52□□□□□ -1.37
CLN3-261ENST00000637686 ZC2HC1BQ5TFG8 222 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 C1orf43Q9BWL3 253 aa6.52□□□□□ -1.37
CLN3-261ENST00000637686 HSBP1L1C9JCN9 74 aa6.51□□□□□ -1.37
CLN3-261ENST00000637686 ZNF22P17026 224 aaPredicted RBP6.51□□□□□ -1.37
CLN3-261ENST00000637686 HERVK_113P61574 105 aa6.51□□□□□ -1.37
CLN3-261ENST00000637686 Q8N814 137 aa6.51□□□□□ -1.37
CLN3-261ENST00000637686 CHCHD10Q8WYQ3 142 aaPredicted RBP6.51□□□□□ -1.37
CLN3-261ENST00000637686 LRP1BQ9NZR2 4599 aa6.5□□□□□ -1.37
CLN3-261ENST00000637686 DNAH5Q8TE73 4624 aa6.5□□□□□ -1.37
CLN3-261ENST00000637686 A0A087WZ39 114 aa6.5□□□□□ -1.37
CLN3-261ENST00000637686 S100A12P80511 92 aa6.5□□□□□ -1.37
CLN3-261ENST00000637686 CDPF1Q6NVV7 123 aa6.5□□□□□ -1.37
CLN3-261ENST00000637686 IGLV10-54A0A075B6I4 117 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 IGLV5-52A0A0A0MRZ9 124 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 TMEM223A0PJW6 202 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 E9PLD3 99 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 KRTAP26-1Q6PEX3 210 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 LINC00469Q8N7U9 141 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 PMCHL2Q9BQD1 86 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 VAMP8Q9BV40 100 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 CDKN2A-AS1Q9UH64 79 aa6.49□□□□□ -1.37
CLN3-261ENST00000637686 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.48□□□□□ -1.37
CLN3-261ENST00000637686 IGHV1-58A0A0C4DH39 117 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 IGKV3OR2-268A0A0C4DH90 116 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 IGLV5-39A0A0G2JS06 123 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 COX7A2LO14548 114 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 COX6A2Q02221 97 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 FOXI1Q12951 378 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 TMEM170BQ5T4T1 132 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 LINC00518Q8N0U6 118 aa6.48□□□□□ -1.37
CLN3-261ENST00000637686 NTN5Q8WTR8 489 aaPredicted RBP6.48□□□□□ -1.37
CLN3-261ENST00000637686 APOMO95445 188 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 GCSHP23434 173 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 XCL1P47992 114 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 KRTAP10-1P60331 282 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 SFTA2Q6UW10 78 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 PLEKHB2Q96CS7 222 aa6.47□□□□□ -1.37
CLN3-261ENST00000637686 KIAA1109Q2LD37 5005 aa6.46□□□□□ -1.37
CLN3-261ENST00000637686 GAGE12HA6NDE8 117 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 SMIM1B2RUZ4 78 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 F8WDY8 70 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 LEPROTO15243 131 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 ATOH7Q8N100 152 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 C12orf57Q99622 126 aa6.46□□□□□ -1.38
CLN3-261ENST00000637686 IGHV3-64A0A075B6Q5 118 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 hDV102S1A0JD36 115 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 USP17L23D6RBM5 183 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 CDK2AP2O75956 126 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 NMUP48645 174 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 SPATA45Q537H7 98 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 ANKRD39Q53RE8 183 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 CFAP161Q6P656 301 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms