RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 DAZ3Q9NR90 486 aaKnown RBP2.91□□□□□ -1.94
SCN1A-214ENST00000637038 CCDC168Q8NDH2 2452 aa2.91□□□□□ -1.94
SCN1A-214ENST00000637038 TRAV13-2A0A0B4J235 113 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 ADARB2-AS1A8MUL3 147 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 TRIAP1O43715 76 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 C6orf226Q5I0X4 101 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 C15orf53Q8NAA6 179 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 C4orf3Q8WVX3 66 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 CFAP46Q8IYW2 2715 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 TRGV1A0A0A0MS02 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 LOC100996750A0A140TA64 210 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE12JA6NER3 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE7O76087 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 DNAL4O96015 105 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 CRPP02741 224 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE12FP0CL80 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE12GP0CL81 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE12IP0CL82 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 GAGE4Q13068 117 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 TMEM61Q8N0U2 210 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 KRTAP4-6Q9BYQ5 205 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 UBE2D4Q9Y2X8 147 aa2.9□□□□□ -1.94
SCN1A-214ENST00000637038 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-214ENST00000637038 TRAV8-3A0A0A6YYJ7 113 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 IGKV2-29A2NJV5 120 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-214ENST00000637038 NUPR2A6NF83 97 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 LST1O00453 97 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 C9orf66Q5T8R8 295 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 Q6YL49 198 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 LINC01600Q96MT4 127 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 K7EQD1 137 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 KRTAP1-1Q07627 177 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 TMEM243Q9BU79 118 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 Q9H8V8 135 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 TRRAPQ9Y4A5 3859 aa2.9□□□□□ -1.95
SCN1A-214ENST00000637038 A8MTW9 85 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 H7C423 109 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 COX7A2LO14548 114 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 RBMY1A1P0DJD3 496 aaKnown RBP2.89□□□□□ -1.95
SCN1A-214ENST00000637038 RBMY1CP0DJD4 496 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 ZNF702PQ9H963 129 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 MAP6D1Q9H9H5 199 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 IGHV3OR16-12A0A075B7B8 117 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 TRACP01848 142 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 SLURP1P55000 103 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 NDUFV3P56181 108 aaKnown RBP2.89□□□□□ -1.95
SCN1A-214ENST00000637038 NPC2P61916 151 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 C4orf26Q17RF5 130 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 DNAH3Q8TD57 4116 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 CHCHD7Q9BUK0 85 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 TRAV4A0A0B4J268 109 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 ATP5G1P05496 136 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 RNASE13Q5GAN3 156 aaKnown RBP2.89□□□□□ -1.95
SCN1A-214ENST00000637038 FAM222AQ5U5X8 452 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 FAM19A1Q7Z5A9 133 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 IMUPQ9GZP8 106 aa2.89□□□□□ -1.95
SCN1A-214ENST00000637038 TRGV2A0A075B6R0 118 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 IGLV5-45A0A087WSX0 123 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 TRAV13-1A0A0B4J241 112 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 IGHV3-38A0A0C4DH36 116 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 V9GYY9 64 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 TEX49A0A1B0GTD5 131 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 LINC00694P0DN24 101 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 LINC00308Q8TCZ7 52 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 FAM104AQ969W3 186 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 XCL2Q9UBD3 114 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 CDKN2A-AS1Q9UH64 79 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 ZANQ9Y493 2812 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 FHL3Q13643 280 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 C16orf74Q96GX8 76 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 TRGV4A0A0C4DH28 118 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 H0YGX0 51 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 DEFB114Q30KQ6 69 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 CEMP1Q6PRD7 247 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-214ENST00000637038 LINC00643Q86TS7 51 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 CLEC2BQ92478 149 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 TMEM126AQ9H061 195 aa2.88□□□□□ -1.95
SCN1A-214ENST00000637038 AGRNO00468 2067 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 IGLV5-39A0A0G2JS06 123 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 DNAJC9-AS1A6NH13 148 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 RPL35AP18077 110 aaKnown RBP2.87□□□□□ -1.95
SCN1A-214ENST00000637038 LITAFQ99732 161 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 NIPBLQ6KC79 2804 aaeCLIP2.87□□□□□ -1.95
SCN1A-214ENST00000637038 BAALC-AS2P0C853 105 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 LINC00158P58513 81 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 S100A7L2Q5SY68 101 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 Q5XG85 94 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 C10orf99Q6UWK7 81 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 Q8N2B8 174 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 CSMD3Q7Z407 3707 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 PROK1P58294 105 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 DEFB136Q30KP8 78 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 DAND5Q8N907 189 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 COX7B2Q8TF08 81 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 PRO0628Q9UI54 55 aa2.87□□□□□ -1.95
SCN1A-214ENST00000637038 CR1P17927 2039 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 MALP21145 153 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 ADAMTSL4-AS1Q5T5F5 129 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 FAM19A3Q7Z5A8 133 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 CHCHD5Q9BSY4 110 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms