RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PMCHL1Q16048 86 aa11.8□□□□□ -0.52
CLN3-239ENST00000628023 BAGE3Q86Y29 109 aa11.8□□□□□ -0.52
CLN3-239ENST00000628023 ATP6V1G1O75348 118 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 HBDP02042 147 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 S100A1P23297 94 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 KRTAP10-1P60331 282 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 LINC00173Q6ZV60 143 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 C5orf38Q86SI9 138 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 CHCHD1Q96BP2 118 aaKnown RBP11.79□□□□□ -0.52
CLN3-239ENST00000628023 AMELXQ99217 191 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 DNAH5Q8TE73 4624 aa11.79□□□□□ -0.52
CLN3-239ENST00000628023 UBE2D1P51668 147 aa11.78□□□□□ -0.52
CLN3-239ENST00000628023 GVQW2A0A096LPI5 108 aaPredicted RBP11.77□□□□□ -0.53
CLN3-239ENST00000628023 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.77□□□□□ -0.53
CLN3-239ENST00000628023 APOMO95445 188 aa11.77□□□□□ -0.53
CLN3-239ENST00000628023 APOBP04114 4563 aaKnown RBP11.77□□□□□ -0.53
CLN3-239ENST00000628023 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.76□□□□□ -0.53
CLN3-239ENST00000628023 XGP55808 180 aa11.76□□□□□ -0.53
CLN3-239ENST00000628023 LINC01620Q4KN68 170 aa11.76□□□□□ -0.53
CLN3-239ENST00000628023 LINC00242Q5T6M2 205 aa11.76□□□□□ -0.53
CLN3-239ENST00000628023 A0A096LNJ9 63 aa11.75□□□□□ -0.53
CLN3-239ENST00000628023 ZNF561-AS1K7EIQ3 104 aa11.75□□□□□ -0.53
CLN3-239ENST00000628023 HSBP1O75506 76 aa11.75□□□□□ -0.53
CLN3-239ENST00000628023 IGHV3OR16-9A0A0B4J2B5 98 aa11.74□□□□□ -0.53
CLN3-239ENST00000628023 INAFM2P0DMQ5 153 aa11.74□□□□□ -0.53
CLN3-239ENST00000628023 NDUFA6P56556 154 aa11.74□□□□□ -0.53
CLN3-239ENST00000628023 CNBPP62633 177 aaKnown RBP11.74□□□□□ -0.53
CLN3-239ENST00000628023 GEMIN7Q9H840 131 aaKnown RBP11.74□□□□□ -0.53
CLN3-239ENST00000628023 ATP5LO75964 103 aa11.73□□□□□ -0.53
CLN3-239ENST00000628023 SEC11AP67812 179 aa11.73□□□□□ -0.53
CLN3-239ENST00000628023 PMVKQ15126 192 aa11.73□□□□□ -0.53
CLN3-239ENST00000628023 LINC00526Q96FQ7 95 aa11.73□□□□□ -0.53
CLN3-239ENST00000628023 HERVK_113P63121 156 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 COX6A2Q02221 97 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 SPAG11BQ08648 103 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 PDZD11Q5EBL8 140 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 ORAOV1Q8WV07 137 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 CST9LQ9H4G1 147 aa11.72□□□□□ -0.53
CLN3-239ENST00000628023 Q5VSD8 79 aa11.71□□□□□ -0.53
CLN3-239ENST00000628023 C9orf163Q8N9P6 203 aa11.71□□□□□ -0.53
CLN3-239ENST00000628023 IGHV3-64A0A075B6Q5 118 aa11.7□□□□□ -0.54
CLN3-239ENST00000628023 A0A087WZ39 114 aa11.7□□□□□ -0.54
CLN3-239ENST00000628023 SERF1AO75920 110 aa11.7□□□□□ -0.54
CLN3-239ENST00000628023 SLPIP03973 132 aa11.7□□□□□ -0.54
CLN3-239ENST00000628023 OR10D4PQ8NGN7 298 aa11.7□□□□□ -0.54
CLN3-239ENST00000628023 IGLV4-69A0A075B6H9 119 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 A0A0J9YXV3 536 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 FAM229AH3BQW9 127 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 FAM19A3Q7Z5A8 133 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 FAM19A2Q8N3H0 131 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 LINC00469Q8N7U9 141 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 CARD19Q96LW7 228 aa11.69□□□□□ -0.54
CLN3-239ENST00000628023 PACRGQ96M98 296 aaPredicted RBP11.68□□□□□ -0.54
CLN3-239ENST00000628023 CAMK2N2Q96S95 79 aa11.68□□□□□ -0.54
CLN3-239ENST00000628023 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
CLN3-239ENST00000628023 SYCNQ0VAF6 134 aa11.67□□□□□ -0.54
CLN3-239ENST00000628023 DMBT1Q9UGM3 2413 aaPredicted RBP11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BKO60814 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 SMR3BP02814 79 aaPredicted RBP11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BJP06899 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BOP23527 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BBP33778 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BDP58876 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 LINC00310P59036 64 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BCP62807 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HAMPP81172 84 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST2H2BEQ16778 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.66□□□□□ -0.54
CLN3-239ENST00000628023 LINC01561Q8N1V8 128 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BHQ93079 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 IFI27L1Q96BM0 104 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BNQ99877 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 HIST1H2BMQ99879 126 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 FAM30AQ9NZY2 134 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 CDKN2A-AS1Q9UH64 79 aa11.66□□□□□ -0.54
CLN3-239ENST00000628023 C2orf48Q96LS8 159 aa11.65□□□□□ -0.54
CLN3-239ENST00000628023 PRSS2P07478 247 aa11.64□□□□□ -0.55
CLN3-239ENST00000628023 CHAC1Q9BUX1 264 aa11.64□□□□□ -0.55
CLN3-239ENST00000628023 TOMM7Q9P0U1 55 aa11.64□□□□□ -0.55
CLN3-239ENST00000628023 PKIGQ9Y2B9 76 aa11.64□□□□□ -0.55
CLN3-239ENST00000628023 NDUFA1O15239 70 aa11.63□□□□□ -0.55
CLN3-239ENST00000628023 LEPROTL1O95214 131 aa11.63□□□□□ -0.55
CLN3-239ENST00000628023 Q6ZRU5 148 aa11.63□□□□□ -0.55
CLN3-239ENST00000628023 Q6ZSA8 131 aa11.63□□□□□ -0.55
CLN3-239ENST00000628023 H3BRM9 83 aa11.62□□□□□ -0.55
CLN3-239ENST00000628023 NUPR1O60356 82 aa11.62□□□□□ -0.55
CLN3-239ENST00000628023 IGLC3P0DOY3 106 aa11.62□□□□□ -0.55
CLN3-239ENST00000628023 SDIM1Q6ZPB5 146 aa11.62□□□□□ -0.55
CLN3-239ENST00000628023 HSPB8Q9UJY1 196 aa11.62□□□□□ -0.55
CLN3-239ENST00000628023 F8WDY8 70 aa11.61□□□□□ -0.55
CLN3-239ENST00000628023 H0Y8G0 127 aa11.61□□□□□ -0.55
CLN3-239ENST00000628023 CHTOPQ9Y3Y2 248 aaKnown RBP11.61□□□□□ -0.55
CLN3-239ENST00000628023 IGLV5-45A0A087WSX0 123 aa11.6□□□□□ -0.55
CLN3-239ENST00000628023 FABP4P15090 132 aa11.6□□□□□ -0.55
CLN3-239ENST00000628023 SRRM2Q9UQ35 2752 aaKnown RBP11.6□□□□□ -0.55
CLN3-239ENST00000628023 SPINK8P0C7L1 97 aa11.59□□□□□ -0.55
CLN3-239ENST00000628023 CKS1BP61024 79 aa11.59□□□□□ -0.55
CLN3-239ENST00000628023 SCXQ7RTU7 201 aa11.59□□□□□ -0.55
CLN3-239ENST00000628023 DPH3Q96FX2 82 aa11.59□□□□□ -0.55
CLN3-239ENST00000628023 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms