RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 HSPG2P98160 4391 aa13.19□□□□□ -0.3
PTCD3-220ENST00000627371 IGHV3OR16-9A0A0B4J2B5 98 aa13.18□□□□□ -0.3
PTCD3-220ENST00000627371 HBDP02042 147 aa13.18□□□□□ -0.3
PTCD3-220ENST00000627371 MALP21145 153 aa13.18□□□□□ -0.3
PTCD3-220ENST00000627371 LINC00242Q5T6M2 205 aa13.18□□□□□ -0.3
PTCD3-220ENST00000627371 C5orf38Q86SI9 138 aa13.18□□□□□ -0.3
PTCD3-220ENST00000627371 LINC01620Q4KN68 170 aa13.17□□□□□ -0.3
PTCD3-220ENST00000627371 CHCHD1Q96BP2 118 aaKnown RBP13.17□□□□□ -0.3
PTCD3-220ENST00000627371 SLPIP03973 132 aa13.16□□□□□ -0.3
PTCD3-220ENST00000627371 PMCHL1Q16048 86 aa13.16□□□□□ -0.3
PTCD3-220ENST00000627371 FAM19A3Q7Z5A8 133 aa13.16□□□□□ -0.3
PTCD3-220ENST00000627371 C9orf163Q8N9P6 203 aa13.15□□□□□ -0.3
PTCD3-220ENST00000627371 HERC2O95714 4834 aa13.15□□□□□ -0.3
PTCD3-220ENST00000627371 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.14□□□□□ -0.31
PTCD3-220ENST00000627371 APOMO95445 188 aa13.14□□□□□ -0.31
PTCD3-220ENST00000627371 S100A1P23297 94 aa13.14□□□□□ -0.31
PTCD3-220ENST00000627371 COX6A2Q02221 97 aa13.14□□□□□ -0.31
PTCD3-220ENST00000627371 BAGE3Q86Y29 109 aa13.14□□□□□ -0.31
PTCD3-220ENST00000627371 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.13□□□□□ -0.31
PTCD3-220ENST00000627371 ATP6V1G1O75348 118 aa13.13□□□□□ -0.31
PTCD3-220ENST00000627371 PDZD11Q5EBL8 140 aa13.13□□□□□ -0.31
PTCD3-220ENST00000627371 A0A087WZ39 114 aa13.12□□□□□ -0.31
PTCD3-220ENST00000627371 ZNF561-AS1K7EIQ3 104 aa13.12□□□□□ -0.31
PTCD3-220ENST00000627371 SEC11AP67812 179 aa13.12□□□□□ -0.31
PTCD3-220ENST00000627371 Q6ZSA8 131 aa13.12□□□□□ -0.31
PTCD3-220ENST00000627371 PMVKQ15126 192 aa13.11□□□□□ -0.31
PTCD3-220ENST00000627371 FAM30AQ9NZY2 134 aa13.11□□□□□ -0.31
PTCD3-220ENST00000627371 IGHV3-64A0A075B6Q5 118 aa13.1□□□□□ -0.31
PTCD3-220ENST00000627371 XGP55808 180 aa13.1□□□□□ -0.31
PTCD3-220ENST00000627371 OR10D4PQ8NGN7 298 aa13.1□□□□□ -0.31
PTCD3-220ENST00000627371 LINC00526Q96FQ7 95 aa13.1□□□□□ -0.31
PTCD3-220ENST00000627371 CST9LQ9H4G1 147 aa13.1□□□□□ -0.31
PTCD3-220ENST00000627371 IGLV4-69A0A075B6H9 119 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 HSBP1O75506 76 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 ATP5LO75964 103 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 HERVK_113P63121 156 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 SPAG11BQ08648 103 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 LINC01561Q8N1V8 128 aa13.09□□□□□ -0.31
PTCD3-220ENST00000627371 A0A0J9YXV3 536 aa13.08□□□□□ -0.32
PTCD3-220ENST00000627371 ORAOV1Q8WV07 137 aa13.08□□□□□ -0.32
PTCD3-220ENST00000627371 GEMIN7Q9H840 131 aaKnown RBP13.08□□□□□ -0.32
PTCD3-220ENST00000627371 SERF1AO75920 110 aa13.07□□□□□ -0.32
PTCD3-220ENST00000627371 LINC00310P59036 64 aa13.07□□□□□ -0.32
PTCD3-220ENST00000627371 SDIM1Q6ZPB5 146 aa13.07□□□□□ -0.32
PTCD3-220ENST00000627371 CARD19Q96LW7 228 aa13.07□□□□□ -0.32
PTCD3-220ENST00000627371 TINCRA0A1B0GVN0 87 aa13.06□□□□□ -0.32
PTCD3-220ENST00000627371 SYCNQ0VAF6 134 aa13.06□□□□□ -0.32
PTCD3-220ENST00000627371 C2orf48Q96LS8 159 aa13.06□□□□□ -0.32
PTCD3-220ENST00000627371 FAM19A2Q8N3H0 131 aa13.05□□□□□ -0.32
PTCD3-220ENST00000627371 CDKN2A-AS1Q9UH64 79 aa13.05□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BKO60814 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BJP06899 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BOP23527 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BBP33778 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BDP58876 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BCP62807 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HAMPP81172 84 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST2H2BEQ16778 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BHQ93079 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 CAMK2N2Q96S95 79 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BNQ99877 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 HIST1H2BMQ99879 126 aa13.04□□□□□ -0.32
PTCD3-220ENST00000627371 IGLV5-45A0A087WSX0 123 aa13.03□□□□□ -0.32
PTCD3-220ENST00000627371 NDUFA6P56556 154 aa13.03□□□□□ -0.32
PTCD3-220ENST00000627371 Q6ZRU5 148 aa13.03□□□□□ -0.32
PTCD3-220ENST00000627371 F8WDY8 70 aa13.02□□□□□ -0.33
PTCD3-220ENST00000627371 LINC00469Q8N7U9 141 aa13.02□□□□□ -0.33
PTCD3-220ENST00000627371 IFI27L1Q96BM0 104 aa13.02□□□□□ -0.33
PTCD3-220ENST00000627371 NUPR1O60356 82 aa13.01□□□□□ -0.33
PTCD3-220ENST00000627371 IGLC3P0DOY3 106 aa13.01□□□□□ -0.33
PTCD3-220ENST00000627371 KIAA0087Q14695 138 aa13.01□□□□□ -0.33
PTCD3-220ENST00000627371 PACRGQ96M98 296 aaPredicted RBP13.01□□□□□ -0.33
PTCD3-220ENST00000627371 CHAC1Q9BUX1 264 aa13.01□□□□□ -0.33
PTCD3-220ENST00000627371 SCXQ7RTU7 201 aa13□□□□□ -0.33
PTCD3-220ENST00000627371 PKIGQ9Y2B9 76 aa13□□□□□ -0.33
PTCD3-220ENST00000627371 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13□□□□□ -0.33
PTCD3-220ENST00000627371 NDUFA1O15239 70 aa12.99□□□□□ -0.33
PTCD3-220ENST00000627371 TRAV12-1A0A0B4J245 112 aa12.98□□□□□ -0.33
PTCD3-220ENST00000627371 LEPROTL1O95214 131 aa12.98□□□□□ -0.33
PTCD3-220ENST00000627371 CIRBPQ14011 172 aaKnown RBP12.98□□□□□ -0.33
PTCD3-220ENST00000627371 MRPL35Q9NZE8 188 aaKnown RBP12.98□□□□□ -0.33
PTCD3-220ENST00000627371 FAT1Q14517 4588 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 SMIM1B2RUZ4 78 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 PANO1I0J062 215 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 Q8IZM0 81 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 CIRBP-AS1Q8TBR5 109 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 KRTAP17-1Q9BYP8 105 aa12.97□□□□□ -0.33
PTCD3-220ENST00000627371 PRSS2P07478 247 aa12.96□□□□□ -0.33
PTCD3-220ENST00000627371 CHTF8P0CG12 524 aa12.96□□□□□ -0.33
PTCD3-220ENST00000627371 RNF151Q2KHN1 245 aa12.96□□□□□ -0.33
PTCD3-220ENST00000627371 Q8N1X5 172 aa12.96□□□□□ -0.33
PTCD3-220ENST00000627371 TOMM7Q9P0U1 55 aa12.96□□□□□ -0.33
PTCD3-220ENST00000627371 H3BRM9 83 aa12.95□□□□□ -0.34
PTCD3-220ENST00000627371 C10orf25Q5T742 122 aa12.95□□□□□ -0.34
PTCD3-220ENST00000627371 UNQ6190/PRO20217Q6UXQ8 127 aa12.95□□□□□ -0.34
PTCD3-220ENST00000627371 SPACA4Q8TDM5 124 aa12.95□□□□□ -0.34
PTCD3-220ENST00000627371 CHTOPQ9Y3Y2 248 aaKnown RBP12.95□□□□□ -0.34
PTCD3-220ENST00000627371 A0A096LNI7 61 aa12.94□□□□□ -0.34
PTCD3-220ENST00000627371 LOC107984640A0A0U1RRK4 108 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms