RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 IGFL3Q6UXB1 125 aa5.77□□□□□ -1.49
VPS11-209ENST00000622309 TRAV7A0A075B6U4 112 aa5.77□□□□□ -1.49
VPS11-209ENST00000622309 SNURFQ9Y675 71 aa5.77□□□□□ -1.49
VPS11-209ENST00000622309 NDUFA1O15239 70 aa5.76□□□□□ -1.49
VPS11-209ENST00000622309 BSPH1Q075Z2 132 aa5.76□□□□□ -1.49
VPS11-209ENST00000622309 C9orf129Q5T035 196 aaKnown RBP5.76□□□□□ -1.49
VPS11-209ENST00000622309 PLAC8L1A1L4L8 177 aa5.76□□□□□ -1.49
VPS11-209ENST00000622309 NCR3O14931 201 aa5.76□□□□□ -1.49
VPS11-209ENST00000622309 Q9H8V8 135 aa5.76□□□□□ -1.49
VPS11-209ENST00000622309 MAP1AP78559 2803 aaPredicted RBP5.76□□□□□ -1.49
VPS11-209ENST00000622309 CD164L2Q6UWJ8 174 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 CRPP02741 224 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 C15orf32Q32M92 178 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 RMI2Q96E14 147 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 TRAV13-2A0A0B4J235 113 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 M0QY20 66 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 KLKP1Q107X0 134 aa5.75□□□□□ -1.49
VPS11-209ENST00000622309 CLEC19AQ6UXS0 136 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 SOSTDC1Q6X4U4 206 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 MOB4Q9Y3A3 225 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 LRRK2Q5S007 2527 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 C8orf87E5RJ46 101 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 LY6HO94772 140 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 ATP5EP56381 51 aaPredicted RBP5.74□□□□□ -1.49
VPS11-209ENST00000622309 BLCAPP62952 87 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 LINC01560Q8TB33 94 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 SPG11Q96JI7 2443 aa5.74□□□□□ -1.49
VPS11-209ENST00000622309 DEFB1P60022 68 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 UBL5Q9BZL1 73 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 A0A087WYN8 130 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 NDUFC1O43677 76 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 PIK3CD-AS1Q5SR53 167 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 UNQ9165/PRO28630Q6UXU0 137 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 NPBQ8NG41 125 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 USP9YO00507 2555 aaPredicted RBP5.73□□□□□ -1.49
VPS11-209ENST00000622309 KRTAP21-3Q3LHN1 58 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 OBSCN-AS1Q96MR7 158 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 CDKN2A-AS1Q9UH64 79 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 CREBBPQ92793 2442 aa5.73□□□□□ -1.49
VPS11-209ENST00000622309 H0YGX0 51 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 LECT2O14960 151 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 BCE1O60756 84 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 ECSCRQ19T08 205 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 NOTCH2Q04721 2471 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 MUC4Q99102 2169 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.72□□□□□ -1.493e-7■■■■□ 25
VPS11-209ENST00000622309 TRBV10-3A0A0K0K1G6 114 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 DPM3Q9P2X0 92 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 FLNCQ14315 2725 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 ANKRD17O75179 2603 aaKnown RBP5.72□□□□□ -1.49
VPS11-209ENST00000622309 ITLN2Q8WWU7 325 aaPredicted RBP5.72□□□□□ -1.49
VPS11-209ENST00000622309 BPESC1Q9GZL8 116 aa5.72□□□□□ -1.49
VPS11-209ENST00000622309 TEP1Q99973 2627 aaKnown RBP5.71□□□□□ -1.5
VPS11-209ENST00000622309 MIR7-3HGQ8N6C7 128 aa5.71□□□□□ -1.5
VPS11-209ENST00000622309 KAAG1Q9UBP8 84 aa5.71□□□□□ -1.5
VPS11-209ENST00000622309 SORL1Q92673 2214 aa5.71□□□□□ -1.5
VPS11-209ENST00000622309 DAD1P61803 113 aa5.71□□□□□ -1.5
VPS11-209ENST00000622309 ORMDL1Q9P0S3 153 aa5.71□□□□□ -1.5
VPS11-209ENST00000622309 IGKV3-7A0A075B6H7 116 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 GNLYP22749 145 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 LAMTOR3Q9UHA4 124 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 E7EQL1 145 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 SLPIP03973 132 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 VPS13CQ709C8 3753 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 RPL36AP83881 106 aaKnown RBP5.7□□□□□ -1.5
VPS11-209ENST00000622309 CFHR3Q02985 330 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 SPATA3Q8NHX4 192 aa5.7□□□□□ -1.5
VPS11-209ENST00000622309 RPL36ALQ969Q0 106 aaKnown RBP5.7□□□□□ -1.5
VPS11-209ENST00000622309 HRNRQ86YZ3 2850 aaPredicted RBP5.69□□□□□ -1.5
VPS11-209ENST00000622309 FAM19A3Q7Z5A8 133 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 LINC01356Q8N9X3 169 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 HIVEP3Q5T1R4 2406 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 ZFHX3Q15911 3703 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 JMJD7-PLA2G4BH0Y9G9 81 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 C6orf223Q8N319 242 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 SMIM11BQ8TCY0 68 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 KLK9Q9UKQ9 250 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 CELSR1Q9NYQ6 3014 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 REG3AQ06141 175 aa5.69□□□□□ -1.5
VPS11-209ENST00000622309 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.68□□□□□ -1.5
VPS11-209ENST00000622309 IGKV2-29A2NJV5 120 aaPredicted RBP5.68□□□□□ -1.5
VPS11-209ENST00000622309 PRR15Q8IV56 129 aa5.68□□□□□ -1.5
VPS11-209ENST00000622309 FAM104AQ969W3 186 aa5.68□□□□□ -1.5
VPS11-209ENST00000622309 MIFP14174 115 aa5.68□□□□□ -1.5
VPS11-209ENST00000622309 NOTCH3Q9UM47 2321 aa5.68□□□□□ -1.5
VPS11-209ENST00000622309 SND1-IT1Q9HBX3 110 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 LINC00337Q8N6G1 96 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.67□□□□□ -1.5
VPS11-209ENST00000622309 A0A087WZ39 114 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 IGHV3-73A0A0B4J1V6 119 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 IGHV7-81A0A0B4J1V7 117 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 TRAV10A0A0B4J240 114 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 HAMPP81172 84 aa5.67□□□□□ -1.5
VPS11-209ENST00000622309 IGHV3-16A0A0C4DH30 117 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 FAM229BQ4G0N7 80 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 DOPEY1Q5JWR5 2465 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 ESRGQ1W209 222 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 IGHV1OR15-1A0A075B7D0 117 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 IGLV5-39A0A0G2JS06 123 aa5.66□□□□□ -1.5
VPS11-209ENST00000622309 KLLNB2CW77 178 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms