RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 C12orf74Q32Q52 190 aa12.09□□□□□ -0.47
PCDHGC3-205ENST00000617641 SPANXB1Q9NS25 103 aaPredicted RBP12.09□□□□□ -0.47
PCDHGC3-205ENST00000617641 HTN3P15516 51 aa12.08□□□□□ -0.48
PCDHGC3-205ENST00000617641 NDUFA12Q9UI09 145 aa12.08□□□□□ -0.48
PCDHGC3-205ENST00000617641 A0A0J9YXY3 114 aa12.07□□□□□ -0.48
PCDHGC3-205ENST00000617641 TRAV26-1A0A087WT03 109 aa12.06□□□□□ -0.48
PCDHGC3-205ENST00000617641 IGKV3OR2-268A0A0C4DH90 116 aa12.06□□□□□ -0.48
PCDHGC3-205ENST00000617641 F5H768 121 aa12.06□□□□□ -0.48
PCDHGC3-205ENST00000617641 IGHV3-30P01768 117 aa12.06□□□□□ -0.48
PCDHGC3-205ENST00000617641 IGHV3-30-5P0DP03 117 aa12.06□□□□□ -0.48
PCDHGC3-205ENST00000617641 ANK2Q01484 3957 aa12.05□□□□□ -0.48
PCDHGC3-205ENST00000617641 DNAH3Q8TD57 4116 aa12.05□□□□□ -0.48
PCDHGC3-205ENST00000617641 A0A1B0GWB2 263 aa12.05□□□□□ -0.48
PCDHGC3-205ENST00000617641 ZFAND6Q6FIF0 208 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 COL6A5A8TX70 2615 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 IGLV5-39A0A0G2JS06 123 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 A0A1W2PPM0 123 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 SMIM1B2RUZ4 78 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 SAMD5Q5TGI4 173 aa12.04□□□□□ -0.48
PCDHGC3-205ENST00000617641 TMEM262E9PQX1 116 aa12.03□□□□□ -0.48
PCDHGC3-205ENST00000617641 IGLL5B9A064 214 aa12.02□□□□□ -0.49
PCDHGC3-205ENST00000617641 LITAFQ99732 161 aa12.02□□□□□ -0.49
PCDHGC3-205ENST00000617641 GAGE10A6NGK3 116 aa12□□□□□ -0.49
PCDHGC3-205ENST00000617641 APOMO95445 188 aa12□□□□□ -0.49
PCDHGC3-205ENST00000617641 NDUFA1O15239 70 aa11.99□□□□□ -0.49
PCDHGC3-205ENST00000617641 TEX48A0A1B0GUV7 120 aa11.99□□□□□ -0.49
PCDHGC3-205ENST00000617641 FABP2P12104 132 aa11.99□□□□□ -0.49
PCDHGC3-205ENST00000617641 ADAMTSL4-AS1Q5T5F5 129 aa11.99□□□□□ -0.49
PCDHGC3-205ENST00000617641 MUSTN1Q8IVN3 82 aa11.99□□□□□ -0.49
PCDHGC3-205ENST00000617641 A0A1B0GUV1 79 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 CKS1BP61024 79 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 PGPEP1Q9NXJ5 209 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 K7EP34 96 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 MRPL23Q16540 153 aaKnown RBP11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 Q9H8V8 135 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 SPCS1Q9Y6A9 102 aa11.98□□□□□ -0.49
PCDHGC3-205ENST00000617641 LINC00959A0A1B0GUT2 108 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 CFC1BP0CG36 223 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 CFC1P0CG37 223 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 A4D1N5 150 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 PRB2P02812 416 aaPredicted RBP11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 CLPSL2Q6UWE3 100 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 GTF2H5Q6ZYL4 71 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 Q8N3U1 123 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 ICOSQ9Y6W8 199 aa11.97□□□□□ -0.49
PCDHGC3-205ENST00000617641 SIGMAR1Q99720 223 aa11.96□□□□□ -0.49
PCDHGC3-205ENST00000617641 IGHV3OR16-9A0A0B4J2B5 98 aa11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 PRSS2P07478 247 aa11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 ZNF625Q96I27 306 aaPredicted RBP11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 SPANXDQ9BXN6 97 aa11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 SPANXCQ9NY87 97 aa11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 RPL24P83731 157 aaKnown RBP11.95□□□□□ -0.5
PCDHGC3-205ENST00000617641 NPC2P61916 151 aa11.94□□□□□ -0.5
PCDHGC3-205ENST00000617641 MIAQ16674 131 aa11.94□□□□□ -0.5
PCDHGC3-205ENST00000617641 C11orf68Q9H3H3 251 aaKnown RBP11.94□□□□□ -0.5
PCDHGC3-205ENST00000617641 NOTCH1P46531 2555 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 EIF4EBP3O60516 100 aaPredicted RBP11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 Q6ZTC4 211 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 C5orf38Q86SI9 138 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 DAND5Q8N907 189 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 A0A0J9YWU9 116 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 TIMM17BO60830 172 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 TSPAN13O95857 204 aa11.93□□□□□ -0.5
PCDHGC3-205ENST00000617641 XCL1P47992 114 aa11.92□□□□□ -0.5
PCDHGC3-205ENST00000617641 LINC00269Q8N2A0 174 aa11.92□□□□□ -0.5
PCDHGC3-205ENST00000617641 TENM3Q9P273 2699 aa11.92□□□□□ -0.5
PCDHGC3-205ENST00000617641 SH2D6Q7Z4S9 175 aa11.92□□□□□ -0.5
PCDHGC3-205ENST00000617641 A0A087WZ39 114 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 SS18Q15532 418 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 LELP1Q5T871 98 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 COX7B2Q8TF08 81 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 TOMM7Q9P0U1 55 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 A0A0U1RRA0 63 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 ANGP03950 147 aaKnown RBP11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 SFTA2Q6UW10 78 aa11.91□□□□□ -0.5
PCDHGC3-205ENST00000617641 PRO1854Q9UHT4 67 aa11.9□□□□□ -0.5
PCDHGC3-205ENST00000617641 CIRBPQ14011 172 aaKnown RBP11.89□□□□□ -0.51
PCDHGC3-205ENST00000617641 MTURNQ8N3F0 131 aa11.89□□□□□ -0.51
PCDHGC3-205ENST00000617641 A0A0B4J2C4 111 aa11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 NANOS2P60321 138 aaKnown RBP11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 HERV-K104P63124 156 aa11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 MEIG1Q5JSS6 88 aa11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 KPRPQ5T749 579 aaPredicted RBP11.88□□□□□ -0.51
PCDHGC3-205ENST00000617641 LYPD5Q6UWN5 251 aa11.87□□□□□ -0.51
PCDHGC3-205ENST00000617641 K7EIL1 84 aa11.87□□□□□ -0.51
PCDHGC3-205ENST00000617641 REG3AQ06141 175 aa11.87□□□□□ -0.51
PCDHGC3-205ENST00000617641 IGLV10-54A0A075B6I4 117 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 NBEAL1Q6ZS30 2694 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 LOC107984156A0A0G2JMH3 177 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 IGHV3-33P01772 117 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 IFITM1P13164 125 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 ARL17AQ8IVW1 177 aa11.86□□□□□ -0.51
PCDHGC3-205ENST00000617641 H3BNG1 76 aa11.85□□□□□ -0.51
PCDHGC3-205ENST00000617641 H7C2G1 150 aa11.85□□□□□ -0.51
PCDHGC3-205ENST00000617641 C11orf45Q8TAV5 145 aa11.85□□□□□ -0.51
PCDHGC3-205ENST00000617641 LINC00308Q8TCZ7 52 aa11.85□□□□□ -0.51
PCDHGC3-205ENST00000617641 CHCHD10Q8WYQ3 142 aaPredicted RBP11.85□□□□□ -0.51
PCDHGC3-205ENST00000617641 H3BMG7 143 aa11.84□□□□□ -0.51
PCDHGC3-205ENST00000617641 MRAPQ8TCY5 172 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms