RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LINC00310P59036 64 aa8.68□□□□□ -1.02
LINC00540-202ENST00000616974 FA2HQ7L5A8 372 aa8.68□□□□□ -1.02
LINC00540-202ENST00000616974 AMELXQ99217 191 aa8.68□□□□□ -1.02
LINC00540-202ENST00000616974 Q6ZSA8 131 aa8.68□□□□□ -1.02
LINC00540-202ENST00000616974 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.68□□□□□ -1.02
LINC00540-202ENST00000616974 GVQW2A0A096LPI5 108 aaPredicted RBP8.67□□□□□ -1.02
LINC00540-202ENST00000616974 CHTF8P0CG12 524 aa8.67□□□□□ -1.02
LINC00540-202ENST00000616974 UBE2D1P51668 147 aa8.67□□□□□ -1.02
LINC00540-202ENST00000616974 C9orf163Q8N9P6 203 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 AP5S1Q9NUS5 200 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 LINC00614P0C842 121 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 C14orf177Q52M58 125 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 TEX43Q6ZNM6 134 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 SCGB3A1Q96QR1 104 aa8.66□□□□□ -1.02
LINC00540-202ENST00000616974 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.02
LINC00540-202ENST00000616974 K7EMI3 77 aa8.65□□□□□ -1.02
LINC00540-202ENST00000616974 COX7A2LO14548 114 aa8.65□□□□□ -1.02
LINC00540-202ENST00000616974 NUPR1O60356 82 aa8.65□□□□□ -1.02
LINC00540-202ENST00000616974 CNBPP62633 177 aaKnown RBP8.65□□□□□ -1.02
LINC00540-202ENST00000616974 SDIM1Q6ZPB5 146 aa8.65□□□□□ -1.02
LINC00540-202ENST00000616974 IGLV4-69A0A075B6H9 119 aa8.65□□□□□ -1.03
LINC00540-202ENST00000616974 A0A0J9YXV3 536 aa8.65□□□□□ -1.03
LINC00540-202ENST00000616974 SCXQ7RTU7 201 aa8.65□□□□□ -1.03
LINC00540-202ENST00000616974 ERASQ7Z444 233 aa8.64□□□□□ -1.03
LINC00540-202ENST00000616974 FAM19A2Q8N3H0 131 aa8.64□□□□□ -1.03
LINC00540-202ENST00000616974 TIMM17AQ99595 171 aa8.64□□□□□ -1.03
LINC00540-202ENST00000616974 VCX2Q9H322 139 aa8.64□□□□□ -1.03
LINC00540-202ENST00000616974 MALP21145 153 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 SMAGPQ0VAQ4 97 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 IGHV1-58A0A0C4DH39 117 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 C10orf25Q5T742 122 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 Q6ZRU5 148 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 CIRBP-AS1Q8TBR5 109 aa8.63□□□□□ -1.03
LINC00540-202ENST00000616974 ATP6V1G1O75348 118 aa8.62□□□□□ -1.03
LINC00540-202ENST00000616974 CDKN2A-AS1Q9UH64 79 aa8.62□□□□□ -1.03
LINC00540-202ENST00000616974 Q6ZN92 141 aa8.61□□□□□ -1.03
LINC00540-202ENST00000616974 ORAOV1Q8WV07 137 aa8.61□□□□□ -1.03
LINC00540-202ENST00000616974 SERF1AO75920 110 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 HBDP02042 147 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 PDZD11Q5EBL8 140 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 CFAP161Q6P656 301 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 C2orf82Q6UX34 121 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 CST9LQ9H4G1 147 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 A0A087WZ39 114 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 SPAG11BQ08648 103 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 KIAA0087Q14695 138 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 C2orf88Q9BSF0 95 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 CHAC1Q9BUX1 264 aa8.6□□□□□ -1.03
LINC00540-202ENST00000616974 IGHV3-64A0A075B6Q5 118 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 A0A096LNI7 61 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 IGKV2-24A0A0C4DH68 120 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 ZNF561-AS1K7EIQ3 104 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 Q8N1X5 172 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 UNQ6190/PRO20217Q6UXQ8 127 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 BAGE3Q86Y29 109 aa8.59□□□□□ -1.03
LINC00540-202ENST00000616974 NDUFA6P56556 154 aa8.58□□□□□ -1.04
LINC00540-202ENST00000616974 SYCNQ0VAF6 134 aa8.58□□□□□ -1.04
LINC00540-202ENST00000616974 FAM19A3Q7Z5A8 133 aa8.58□□□□□ -1.04
LINC00540-202ENST00000616974 CARD19Q96LW7 228 aa8.58□□□□□ -1.04
LINC00540-202ENST00000616974 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BKO60814 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BJP06899 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BOP23527 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BBP33778 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BDP58876 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BCP62807 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST2H2BEQ16778 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 C9orf116Q5BN46 136 aaPredicted RBP8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.57□□□□□ -1.04
LINC00540-202ENST00000616974 Q5VSD8 79 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BHQ93079 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 CAMK2N2Q96S95 79 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BNQ99877 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 HIST1H2BMQ99879 126 aa8.57□□□□□ -1.04
LINC00540-202ENST00000616974 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.56□□□□□ -1.04
LINC00540-202ENST00000616974 NPSP0C0P6 89 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 PMVKQ15126 192 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 HERC1Q15751 4861 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 LINC00469Q8N7U9 141 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 SPACA4Q8TDM5 124 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 TOMM7Q9P0U1 55 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 C6orf48Q9UBA6 75 aa8.56□□□□□ -1.04
LINC00540-202ENST00000616974 SPINK8P0C7L1 97 aa8.55□□□□□ -1.04
LINC00540-202ENST00000616974 CIRBPQ14011 172 aaKnown RBP8.55□□□□□ -1.04
LINC00540-202ENST00000616974 CHCHD1Q96BP2 118 aaKnown RBP8.55□□□□□ -1.04
LINC00540-202ENST00000616974 A0A087WYN8 130 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 SMIM1B2RUZ4 78 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 G0S2P27469 103 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 RAB5BP61020 215 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 OR10D4PQ8NGN7 298 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 HSBP1O75506 76 aa8.54□□□□□ -1.04
LINC00540-202ENST00000616974 GEMIN7Q9H840 131 aaKnown RBP8.54□□□□□ -1.04
LINC00540-202ENST00000616974 DMBT1Q9UGM3 2413 aaPredicted RBP8.54□□□□□ -1.04
LINC00540-202ENST00000616974 TINCRA0A1B0GVN0 87 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 C11orf86A6NJI1 115 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 H0Y8G0 127 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 APOMO95445 188 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 HERVK_113P63121 156 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 PAPPA-AS1Q5QFB9 102 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 PKHD1L1Q86WI1 4243 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms