RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TTTY13Q9BZ97 58 aa9.67□□□□□ -0.86
USP39-220ENST00000613444 CCL18P55774 89 aa9.66□□□□□ -0.86
USP39-220ENST00000613444 KLK12Q9UKR0 248 aa9.66□□□□□ -0.86
USP39-220ENST00000613444 IGHV3OR16-9A0A0B4J2B5 98 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 DNAH10OSP0CZ25 163 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 ENHOQ6UWT2 76 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 UPK3BQ9BT76 320 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 UQCR10Q9UDW1 63 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
USP39-220ENST00000613444 TRAV8-3A0A0A6YYJ7 113 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 DDTP30046 118 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 TSPEAR-AS2P59090 65 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 HERVK_113P61574 105 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 CCL25O15444 150 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 SPINK8P0C7L1 97 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 SLC25A34Q6PIV7 304 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 MAPKAPK5-AS1Q8N8E1 139 aa9.64□□□□□ -0.87
USP39-220ENST00000613444 VPS13DQ5THJ4 4388 aa9.63□□□□□ -0.87
USP39-220ENST00000613444 DLEU1O43261 78 aa9.63□□□□□ -0.87
USP39-220ENST00000613444 SS18Q15532 418 aa9.63□□□□□ -0.87
USP39-220ENST00000613444 KLK5Q9Y337 293 aaPredicted RBP9.63□□□□□ -0.87
USP39-220ENST00000613444 IGHV3-64A0A075B6Q5 118 aa9.63□□□□□ -0.87
USP39-220ENST00000613444 IGHV1-58A0A0C4DH39 117 aa9.63□□□□□ -0.87
USP39-220ENST00000613444 IGLV5-39A0A0G2JS06 123 aa9.62□□□□□ -0.87
USP39-220ENST00000613444 SMIM1B2RUZ4 78 aa9.62□□□□□ -0.87
USP39-220ENST00000613444 H3BRM9 83 aa9.62□□□□□ -0.87
USP39-220ENST00000613444 LEPROTO15243 131 aa9.62□□□□□ -0.87
USP39-220ENST00000613444 XCL1P47992 114 aa9.62□□□□□ -0.87
USP39-220ENST00000613444 SIVA1O15304 175 aa9.61□□□□□ -0.87
USP39-220ENST00000613444 CHCHD10Q8WYQ3 142 aaPredicted RBP9.61□□□□□ -0.87
USP39-220ENST00000613444 IGLV10-54A0A075B6I4 117 aa9.61□□□□□ -0.87
USP39-220ENST00000613444 A0A087WZ39 114 aa9.61□□□□□ -0.87
USP39-220ENST00000613444 J3QQQ9 107 aa9.61□□□□□ -0.87
USP39-220ENST00000613444 C2orf91Q6ZV80 131 aa9.61□□□□□ -0.87
USP39-220ENST00000613444 CD164L2Q6UWJ8 174 aa9.6□□□□□ -0.87
USP39-220ENST00000613444 UBE2WQ96B02 151 aa9.6□□□□□ -0.87
USP39-220ENST00000613444 LINC00587B1AMM8 73 aa9.6□□□□□ -0.87
USP39-220ENST00000613444 C5orf38Q86SI9 138 aa9.59□□□□□ -0.87
USP39-220ENST00000613444 PLEKHB2Q96CS7 222 aa9.59□□□□□ -0.87
USP39-220ENST00000613444 MYMXA0A1B0GTQ4 84 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 FOXI1Q12951 378 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 ZFAND6Q6FIF0 208 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 KRTAP26-1Q6PEX3 210 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 Q9H8V8 135 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 TRAV8-4A0A0B4J246 113 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 CRPP02741 224 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 MIAQ16674 131 aa9.58□□□□□ -0.88
USP39-220ENST00000613444 HNRNPA3P51991 378 aaKnown RBP9.57□□□□□ -0.88
USP39-220ENST00000613444 MUC7Q8TAX7 377 aa9.57□□□□□ -0.88
USP39-220ENST00000613444 ZNF815PA8K554 130 aa9.57□□□□□ -0.88
USP39-220ENST00000613444 LINC01561Q8N1V8 128 aa9.57□□□□□ -0.88
USP39-220ENST00000613444 IBA57-AS1B1ANH7 110 aa9.56□□□□□ -0.88
USP39-220ENST00000613444 LGALS3P17931 250 aaKnown RBP9.56□□□□□ -0.88
USP39-220ENST00000613444 GAGE12HA6NDE8 117 aa9.56□□□□□ -0.88
USP39-220ENST00000613444 CTAG1AP78358 180 aa9.55□□□□□ -0.88
USP39-220ENST00000613444 WWC2-AS2Q96NR7 200 aa9.55□□□□□ -0.88
USP39-220ENST00000613444 COX7A2LO14548 114 aa9.54□□□□□ -0.88
USP39-220ENST00000613444 UBE2DNLQ8IWF7 75 aa9.54□□□□□ -0.88
USP39-220ENST00000613444 C10orf126Q8N4M7 172 aa9.54□□□□□ -0.88
USP39-220ENST00000613444 KRTAP1-5Q9BYS1 174 aa9.54□□□□□ -0.88
USP39-220ENST00000613444 HIGD1BQ9P298 99 aa9.54□□□□□ -0.88
USP39-220ENST00000613444 DNAH10Q8IVF4 4471 aa9.53□□□□□ -0.88
USP39-220ENST00000613444 NDUFA12Q9UI09 145 aa9.53□□□□□ -0.88
USP39-220ENST00000613444 TMEM238LA0A1B0GVL6 79 aa9.52□□□□□ -0.89
USP39-220ENST00000613444 NDUFA1O15239 70 aa9.52□□□□□ -0.89
USP39-220ENST00000613444 COX7B2Q8TF08 81 aa9.52□□□□□ -0.89
USP39-220ENST00000613444 ZNF625Q96I27 306 aaPredicted RBP9.52□□□□□ -0.89
USP39-220ENST00000613444 K7EP13 123 aa9.51□□□□□ -0.89
USP39-220ENST00000613444 KMT2AQ03164 3969 aa9.51□□□□□ -0.89
USP39-220ENST00000613444 KIAA0087Q14695 138 aa9.51□□□□□ -0.89
USP39-220ENST00000613444 C1orf43Q9BWL3 253 aa9.51□□□□□ -0.89
USP39-220ENST00000613444 Q9HAA7 133 aa9.51□□□□□ -0.89
USP39-220ENST00000613444 A0A0J9YXY3 114 aa9.5□□□□□ -0.89
USP39-220ENST00000613444 IGKV2D-24A0A075B6R9 120 aa9.5□□□□□ -0.89
USP39-220ENST00000613444 MALP21145 153 aa9.5□□□□□ -0.89
USP39-220ENST00000613444 Q8IZM0 81 aa9.5□□□□□ -0.89
USP39-220ENST00000613444 TOMM7Q9P0U1 55 aa9.5□□□□□ -0.89
USP39-220ENST00000613444 SCGB1D4Q6XE38 83 aa9.49□□□□□ -0.89
USP39-220ENST00000613444 ORAOV1Q8WV07 137 aa9.48□□□□□ -0.89
USP39-220ENST00000613444 LITAFQ99732 161 aa9.48□□□□□ -0.89
USP39-220ENST00000613444 SNHG12Q9BXW3 62 aa9.48□□□□□ -0.89
USP39-220ENST00000613444 DNAH6Q9C0G6 4158 aa9.48□□□□□ -0.89
USP39-220ENST00000613444 CASC10Q5T4H9 136 aa9.47□□□□□ -0.89
USP39-220ENST00000613444 HSD52Q0P140 79 aa9.47□□□□□ -0.89
USP39-220ENST00000613444 EREGO14944 169 aa9.46□□□□□ -0.89
USP39-220ENST00000613444 APOMO95445 188 aa9.46□□□□□ -0.89
USP39-220ENST00000613444 C15orf56Q8N910 161 aa9.46□□□□□ -0.89
USP39-220ENST00000613444 ALMS1Q8TCU4 4167 aa9.46□□□□□ -0.9
USP39-220ENST00000613444 HINT1P49773 126 aaPredicted RBP9.46□□□□□ -0.9
USP39-220ENST00000613444 C6orf226Q5I0X4 101 aa9.46□□□□□ -0.9
USP39-220ENST00000613444 BVES-AS1Q5T3Y7 98 aa9.46□□□□□ -0.9
USP39-220ENST00000613444 SPANXB1Q9NS25 103 aaPredicted RBP9.46□□□□□ -0.9
USP39-220ENST00000613444 NBDYA0A0U1RRE5 68 aa9.45□□□□□ -0.9
USP39-220ENST00000613444 HERV-K104P63124 156 aa9.45□□□□□ -0.9
USP39-220ENST00000613444 ADAMTSL4-AS1Q5T5F5 129 aa9.45□□□□□ -0.9
USP39-220ENST00000613444 C2orf82Q6UX34 121 aa9.45□□□□□ -0.9
USP39-220ENST00000613444 PRSS2P07478 247 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 SPAG11BQ08648 103 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 TAL2Q16559 108 aa9.44□□□□□ -0.9
USP39-220ENST00000613444 M0R143 59 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 311 ms