RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HBDP02042 147 aa10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 PYY3Q5JQD4 70 aa10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 LINC00518Q8N0U6 118 aa10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 C12orf57Q99622 126 aa10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 HSPB8Q9UJY1 196 aa10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 DYNC1H1Q14204 4646 aaKnown RBP10.83□□□□□ -0.68
CCDC28A-202ENST00000611852 IGIPA6NJ69 53 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 PRSS1P07477 247 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 KRTDAPP60985 99 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 JOSD1Q15040 202 aaPredicted RBP10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 CD164L2Q6UWJ8 174 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 TOMM6Q96B49 74 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 DNAH5Q8TE73 4624 aa10.82□□□□□ -0.68
CCDC28A-202ENST00000611852 GCSHP23434 173 aa10.81□□□□□ -0.68
CCDC28A-202ENST00000611852 TMEM141Q96I45 108 aa10.81□□□□□ -0.68
CCDC28A-202ENST00000611852 NPSP0C0P6 89 aa10.8□□□□□ -0.68
CCDC28A-202ENST00000611852 C15orf56Q8N910 161 aa10.8□□□□□ -0.68
CCDC28A-202ENST00000611852 KRTAP10-1P60331 282 aa10.79□□□□□ -0.68
CCDC28A-202ENST00000611852 SCGB1D1O95968 90 aa10.79□□□□□ -0.68
CCDC28A-202ENST00000611852 CFAP161Q6P656 301 aa10.79□□□□□ -0.68
CCDC28A-202ENST00000611852 TEX43Q6ZNM6 134 aa10.79□□□□□ -0.68
CCDC28A-202ENST00000611852 TIMM17AQ99595 171 aa10.79□□□□□ -0.68
CCDC28A-202ENST00000611852 LRP1BQ9NZR2 4599 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 A0A096LNJ9 63 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 hDV102S1A0JD36 115 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 LINC01549A6NIU2 74 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 C3orf79P0CE67 100 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 Q6ZN92 141 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 LINC00173Q6ZV60 143 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 ERASQ7Z444 233 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 AMELXQ99217 191 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 MAP1LC3CQ9BXW4 147 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 KIAA1109Q2LD37 5005 aa10.78□□□□□ -0.68
CCDC28A-202ENST00000611852 ZC2HC1BQ5TFG8 222 aa10.77□□□□□ -0.69
CCDC28A-202ENST00000611852 SCGB3A1Q96QR1 104 aa10.77□□□□□ -0.69
CCDC28A-202ENST00000611852 VCX2Q9H322 139 aa10.77□□□□□ -0.69
CCDC28A-202ENST00000611852 PAPPA-AS1Q5QFB9 102 aa10.76□□□□□ -0.69
CCDC28A-202ENST00000611852 C20orf202A1L168 122 aa10.75□□□□□ -0.69
CCDC28A-202ENST00000611852 COX7A2LO14548 114 aa10.75□□□□□ -0.69
CCDC28A-202ENST00000611852 LINC01620Q4KN68 170 aa10.75□□□□□ -0.69
CCDC28A-202ENST00000611852 C2orf88Q9BSF0 95 aa10.75□□□□□ -0.69
CCDC28A-202ENST00000611852 GVQW2A0A096LPI5 108 aaPredicted RBP10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 IGHV3OR16-9A0A0B4J2B5 98 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 IGHV1-58A0A0C4DH39 117 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 CDK2AP2O75956 126 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 UBE2D1P51668 147 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 HIGD2BQ4VC39 106 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 LINC00242Q5T6M2 205 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 SYS1-DBNDD2H3BUS1 97 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 SLPIP03973 132 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 CNBPP62633 177 aaKnown RBP10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 S100A12P80511 92 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 C5orf38Q86SI9 138 aa10.74□□□□□ -0.69
CCDC28A-202ENST00000611852 ATP5LO75964 103 aa10.73□□□□□ -0.69
CCDC28A-202ENST00000611852 MALP21145 153 aa10.73□□□□□ -0.69
CCDC28A-202ENST00000611852 PET117Q6UWS5 81 aa10.73□□□□□ -0.69
CCDC28A-202ENST00000611852 IFI27L1Q96BM0 104 aa10.73□□□□□ -0.69
CCDC28A-202ENST00000611852 C9orf163Q8N9P6 203 aa10.72□□□□□ -0.69
CCDC28A-202ENST00000611852 COX6A2Q02221 97 aa10.71□□□□□ -0.69
CCDC28A-202ENST00000611852 H0Y8G0 127 aa10.7□□□□□ -0.7
CCDC28A-202ENST00000611852 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.7□□□□□ -0.7
CCDC28A-202ENST00000611852 FAM19A3Q7Z5A8 133 aa10.7□□□□□ -0.7
CCDC28A-202ENST00000611852 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.69□□□□□ -0.7
CCDC28A-202ENST00000611852 LINC00526Q96FQ7 95 aa10.69□□□□□ -0.7
CCDC28A-202ENST00000611852 FAM30AQ9NZY2 134 aa10.69□□□□□ -0.7
CCDC28A-202ENST00000611852 A0A087WZ39 114 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 ZNF561-AS1K7EIQ3 104 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 APOMO95445 188 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 XGP55808 180 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 Q6ZSA8 131 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 PMVKQ15126 192 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 LINC01545Q5VT33 79 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 CST9LQ9H4G1 147 aa10.68□□□□□ -0.7
CCDC28A-202ENST00000611852 RYR1P21817 5038 aa10.67□□□□□ -0.7
CCDC28A-202ENST00000611852 IGHV3-64A0A075B6Q5 118 aa10.67□□□□□ -0.7
CCDC28A-202ENST00000611852 SEC11AP67812 179 aa10.67□□□□□ -0.7
CCDC28A-202ENST00000611852 VAMP8Q9BV40 100 aa10.67□□□□□ -0.7
CCDC28A-202ENST00000611852 IGLV4-69A0A075B6H9 119 aa10.66□□□□□ -0.7
CCDC28A-202ENST00000611852 A0A0J9YXV3 536 aa10.66□□□□□ -0.7
CCDC28A-202ENST00000611852 APOBP04114 4563 aaKnown RBP10.66□□□□□ -0.7
CCDC28A-202ENST00000611852 HERVK_113P63121 156 aa10.66□□□□□ -0.7
CCDC28A-202ENST00000611852 SDIM1Q6ZPB5 146 aa10.66□□□□□ -0.7
CCDC28A-202ENST00000611852 ORAOV1Q8WV07 137 aa10.65□□□□□ -0.7
CCDC28A-202ENST00000611852 SPAG11BQ08648 103 aa10.64□□□□□ -0.71
CCDC28A-202ENST00000611852 GEMIN7Q9H840 131 aaKnown RBP10.64□□□□□ -0.71
CCDC28A-202ENST00000611852 CDKN2A-AS1Q9UH64 79 aa10.64□□□□□ -0.71
CCDC28A-202ENST00000611852 TINCRA0A1B0GVN0 87 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 HAMPP81172 84 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 SYCNQ0VAF6 134 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 ATOH7Q8N100 152 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 LINC01561Q8N1V8 128 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 HERC2O95714 4834 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 TSTD3H0UI37 97 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 C2orf48Q96LS8 159 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 CARD19Q96LW7 228 aa10.63□□□□□ -0.71
CCDC28A-202ENST00000611852 HSBP1L1C9JCN9 74 aa10.62□□□□□ -0.71
CCDC28A-202ENST00000611852 CAMK2N2Q96S95 79 aa10.62□□□□□ -0.71
CCDC28A-202ENST00000611852 PAM16Q9Y3D7 125 aa10.62□□□□□ -0.71
CCDC28A-202ENST00000611852 HSPG2P98160 4391 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 IGLV5-45A0A087WSX0 123 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms