RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 SND1-IT1Q9HBX3 110 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 ABCA12Q86UK0 2595 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 MYO9AB2RTY4 2548 aa8.53□□□□□ -1.04
TPM3-223ENST00000611659 UBE2L6O14933 153 aa8.52□□□□□ -1.05
TPM3-223ENST00000611659 LINC00158P58513 81 aa8.52□□□□□ -1.05
TPM3-223ENST00000611659 F5H768 121 aa8.52□□□□□ -1.05
TPM3-223ENST00000611659 FAM222AQ5U5X8 452 aa8.52□□□□□ -1.05
TPM3-223ENST00000611659 CDC42SE2Q9NRR3 84 aa8.51□□□□□ -1.05
TPM3-223ENST00000611659 RPL28P46779 137 aaKnown RBP8.51□□□□□ -1.05
TPM3-223ENST00000611659 LRRK2Q5S007 2527 aa8.51□□□□□ -1.05
TPM3-223ENST00000611659 SONP18583 2426 aaKnown RBP8.51□□□□□ -1.05
TPM3-223ENST00000611659 SMIM11BQ8TCY0 68 aa8.51□□□□□ -1.05
TPM3-223ENST00000611659 PTPN13Q12923 2485 aa8.51□□□□□ -1.05
TPM3-223ENST00000611659 A0A087WVE0 104 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 A0A1B0GX51 115 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 ATOX1O00244 68 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 IGKV2-28A0A075B6P5 120 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 IGKV2D-28P01615 120 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 Q6ZTI0 123 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 OR13C6PQ8NH95 151 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 WNK1Q9H4A3 2382 aa8.5□□□□□ -1.05
TPM3-223ENST00000611659 K7EQD1 137 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 PFN2P35080 140 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 J3KT08 172 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 LECT2O14960 151 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 SLPIP03973 132 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 C2orf48Q96LS8 159 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 CSDC2Q9Y534 153 aaKnown RBP8.49□□□□□ -1.05
TPM3-223ENST00000611659 MXRA5Q9NR99 2828 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 NCR3O14931 201 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 COX7B2Q8TF08 81 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 LINC00846Q9NV44 126 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 IGSF10Q6WRI0 2623 aa8.49□□□□□ -1.05
TPM3-223ENST00000611659 PF4P02776 101 aa8.48□□□□□ -1.05
TPM3-223ENST00000611659 CYSTM1Q9H1C7 97 aa8.48□□□□□ -1.05
TPM3-223ENST00000611659 DOPEY1Q5JWR5 2465 aa8.48□□□□□ -1.05
TPM3-223ENST00000611659 A8MTW9 85 aa8.48□□□□□ -1.05
TPM3-223ENST00000611659 C11orf68Q9H3H3 251 aaKnown RBP8.48□□□□□ -1.05
TPM3-223ENST00000611659 PAX4O43316 350 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 FAM19A5Q7Z5A7 132 aaPredicted RBP8.47□□□□□ -1.05
TPM3-223ENST00000611659 ZNF702PQ9H963 129 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 RPL18AQ02543 176 aaKnown RBP8.47□□□□□ -1.05
TPM3-223ENST00000611659 STHQ8IWL8 128 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 TMEM243Q9BU79 118 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 CRYGAP11844 174 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 FAM19A3Q7Z5A8 133 aa8.47□□□□□ -1.05
TPM3-223ENST00000611659 ANKRD17O75179 2603 aaKnown RBP8.46□□□□□ -1.05
TPM3-223ENST00000611659 OVOL2Q9BRP0 275 aa8.46□□□□□ -1.05
TPM3-223ENST00000611659 LOC100131303A0A0U1RQF7 123 aa8.46□□□□□ -1.06
TPM3-223ENST00000611659 CCL18P55774 89 aa8.46□□□□□ -1.06
TPM3-223ENST00000611659 HIST1H4AP62805 103 aaKnown RBP8.46□□□□□ -1.06
TPM3-223ENST00000611659 C1orf158Q8N1D5 194 aa8.46□□□□□ -1.06
TPM3-223ENST00000611659 NOP10Q9NPE3 64 aaKnown RBP8.46□□□□□ -1.06
TPM3-223ENST00000611659 FBN2P35556 2912 aa8.46□□□□□ -1.06
TPM3-223ENST00000611659 NAV2Q8IVL1 2488 aa8.46□□□□□ -1.06
TPM3-223ENST00000611659 LRRC75A-AS1Q8N1F1 130 aa8.45□□□□□ -1.06
TPM3-223ENST00000611659 ZNF462Q96JM2 2506 aa8.45□□□□□ -1.06
TPM3-223ENST00000611659 TRBV10-1A0A0K0K1A3 114 aa8.45□□□□□ -1.06
TPM3-223ENST00000611659 CCDC168Q8NDH2 2452 aa8.45□□□□□ -1.06
TPM3-223ENST00000611659 TEX15Q9BXT5 2789 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 DEFB114Q30KQ6 69 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 EPG5Q9HCE0 2579 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 TRGV2A0A075B6R0 118 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 H0YGX0 51 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 LINC01356Q8N9X3 169 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 KIR2DL5BQ8NHK3 375 aa8.44□□□□□ -1.06
TPM3-223ENST00000611659 PRB1P04280 392 aa8.43□□□□□ -1.06
TPM3-223ENST00000611659 C11orf44Q8N8P7 122 aa8.43□□□□□ -1.06
TPM3-223ENST00000611659 ODF3L2Q3SX64 289 aa8.43□□□□□ -1.06
TPM3-223ENST00000611659 Q6JHZ5 121 aa8.43□□□□□ -1.06
TPM3-223ENST00000611659 USP17L23D6RBM5 183 aa8.42□□□□□ -1.06
TPM3-223ENST00000611659 SERP2Q8N6R1 65 aa8.42□□□□□ -1.06
TPM3-223ENST00000611659 IGLV4-60A0A075B6I1 120 aa8.42□□□□□ -1.06
TPM3-223ENST00000611659 LINC01561Q8N1V8 128 aa8.42□□□□□ -1.06
TPM3-223ENST00000611659 SMIM9A6NGZ8 99 aa8.41□□□□□ -1.06
TPM3-223ENST00000611659 WFDC9Q8NEX5 89 aa8.41□□□□□ -1.06
TPM3-223ENST00000611659 A0A1W2PRX2 142 aa8.41□□□□□ -1.06
TPM3-223ENST00000611659 RNASE1P07998 156 aaKnown RBP8.41□□□□□ -1.06
TPM3-223ENST00000611659 DSCR8Q96T75 97 aa8.41□□□□□ -1.06
TPM3-223ENST00000611659 NF1P21359 2839 aa8.41□□□□□ -1.06
TPM3-223ENST00000611659 CHD6Q8TD26 2715 aa8.4□□□□□ -1.06
TPM3-223ENST00000611659 ORMDL1Q9P0S3 153 aa8.4□□□□□ -1.06
TPM3-223ENST00000611659 JMJD1CQ15652 2540 aa8.4□□□□□ -1.06
TPM3-223ENST00000611659 C6orf226Q5I0X4 101 aa8.4□□□□□ -1.07
TPM3-223ENST00000611659 Q6YL49 198 aa8.4□□□□□ -1.07
TPM3-223ENST00000611659 TRGV4A0A0C4DH28 118 aa8.39□□□□□ -1.07
TPM3-223ENST00000611659 HILS1P60008 231 aa8.39□□□□□ -1.07
TPM3-223ENST00000611659 C5orf47Q569G3 176 aa8.39□□□□□ -1.07
TPM3-223ENST00000611659 NIPBLQ6KC79 2804 aaeCLIP8.39□□□□□ -1.076e-7■■■□□ 15
TPM3-223ENST00000611659 IBA57-AS1B1ANH7 110 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 PLA2G2AP14555 144 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 IL17DQ8TAD2 202 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 C4orf3Q8WVX3 66 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 OBSCN-AS1Q96MR7 158 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 IGHV3OR16-9A0A0B4J2B5 98 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 TMEM258P61165 79 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 PRR3P79522 188 aaKnown RBP8.38□□□□□ -1.07
TPM3-223ENST00000611659 DPH3Q96FX2 82 aa8.38□□□□□ -1.07
TPM3-223ENST00000611659 TRAV23DV6A0A075B6W5 121 aa8.37□□□□□ -1.07
TPM3-223ENST00000611659 XCL1P47992 114 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms