RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RIGQ13278 110 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 SMIM15Q7Z3B0 74 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 ZNF664Q8N3J9 261 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 FER1L6-AS1Q8NA97 138 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 GATD1Q8NB37 220 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 TMEM18Q96B42 140 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 BORCS7Q96B45 105 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 TMEM101Q96IK0 257 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 TPPP3Q9BW30 176 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 IGLV4-60A0A075B6I1 120 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 IGHV1-58A0A0C4DH39 117 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 HBBP68871 147 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 SMAGPQ0VAQ4 97 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 SUMO4Q6EEV6 95 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 C15orf56Q8N910 161 aa3.94□□□□□ -1.78
CUX1-220ENST00000607092 MUC21A0A0G2JKD1 596 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 MUC21A0A140T8X8 626 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 CCL25O15444 150 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 SLPIP03973 132 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 IGLC6P0CF74 106 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 SSTP61278 116 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 MRPL54Q6P161 138 aaKnown RBP3.93□□□□□ -1.78
CUX1-220ENST00000607092 RNASEKQ6P5S7 137 aaKnown RBP3.93□□□□□ -1.78
CUX1-220ENST00000607092 BAGE3Q86Y29 109 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 PRSS3P2Q8NHM4 247 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 CHCHD10Q8WYQ3 142 aaPredicted RBP3.93□□□□□ -1.78
CUX1-220ENST00000607092 CARD19Q96LW7 228 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 C12orf57Q99622 126 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 HIST1H2BLQ99880 126 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 PSORS1C2Q9UIG4 136 aa3.93□□□□□ -1.78
CUX1-220ENST00000607092 A0A096LNI7 61 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 TRAV26-2A0A0B4J265 109 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 LOC107984640A0A0U1RRK4 108 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 IFITM10A6NMD0 228 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 GAS8-AS1O95177 125 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 RAB4AP20338 218 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 PMCHP20382 165 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 NTF3P20783 257 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 CAMPP49913 170 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 S100A12P80511 92 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 SRSF9Q13242 221 aaKnown RBP eCLIP3.92□□□□□ -1.78
CUX1-220ENST00000607092 JOSD1Q15040 202 aaPredicted RBP3.92□□□□□ -1.78
CUX1-220ENST00000607092 SS18Q15532 418 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 HIGD2BQ4VC39 106 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 OR5A1Q8NGJ0 315 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 OR10D4PQ8NGN7 298 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 ALKBH7Q9BT30 221 aaPredicted RBP3.92□□□□□ -1.78
CUX1-220ENST00000607092 CNFNQ9BYD5 112 aa3.92□□□□□ -1.78
CUX1-220ENST00000607092 IGKV3OR2-268A0A0C4DH90 116 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 PPBPP02775 128 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 FGF6P10767 208 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 FABP4P15090 132 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 CTRLP40313 264 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 SYCNQ0VAF6 134 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 TWIST1Q15672 202 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 LYZL1Q6UWQ5 148 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 DIRC1Q969H9 104 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 CHCHD1Q96BP2 118 aaKnown RBP3.91□□□□□ -1.78
CUX1-220ENST00000607092 TMEM191AQ9H0A3 160 aa3.91□□□□□ -1.78
CUX1-220ENST00000607092 KRTAP23-1A1A580 65 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 I3L3M4 83 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 APOMO95445 188 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 XCL1P47992 114 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 FOXI1Q12951 378 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 KIAA1644Q3SXP7 199 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 PYY3Q5JQD4 70 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 FAM104BQ5XKR9 115 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 CD164L2Q6UWJ8 174 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 C18orf32Q8TCD1 76 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 MRAP2Q96G30 205 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 LAMTOR2Q9Y2Q5 125 aa3.9□□□□□ -1.79
CUX1-220ENST00000607092 IGLV4-69A0A075B6H9 119 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 SDHAF1A6NFY7 115 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 F8WDY8 70 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 NUPR1O60356 82 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 HSBP1O75506 76 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 SERF1AO75920 110 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 PPP1R17O96001 155 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 LINC00614P0C842 121 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 RPL13AP40429 203 aaKnown RBP3.89□□□□□ -1.79
CUX1-220ENST00000607092 C2orf48Q96LS8 159 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 MUC2Q02817 5179 aa3.89□□□□□ -1.79
CUX1-220ENST00000607092 IGLV1-50A0A075B6I6 118 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 TRBV6-5A0A0K0K1A5 114 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 LINC00959A0A1B0GUT2 108 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 COX7A2LO14548 114 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 PDZD11Q5EBL8 140 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 MRPL52Q86TS9 123 aaKnown RBP3.88□□□□□ -1.79
CUX1-220ENST00000607092 ORMDL3Q8N138 153 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 CAMK2N2Q96S95 79 aa3.88□□□□□ -1.79
CUX1-220ENST00000607092 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.87□□□□□ -1.79
CUX1-220ENST00000607092 IGKV2-29A2NJV5 120 aaPredicted RBP3.87□□□□□ -1.79
CUX1-220ENST00000607092 TCAPO15273 167 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 CKS2P33552 79 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 PCP4P48539 62 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 GAGE2BQ13066 116 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 C1orf137Q5JT78 98 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 ST20Q9HBF5 79 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 CDC42SE2Q9NRR3 84 aa3.87□□□□□ -1.79
CUX1-220ENST00000607092 CSDC2Q9Y534 153 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms