RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 NBDYA0A0U1RRE5 68 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 ZNF22P17026 224 aaPredicted RBP6.88□□□□□ -1.31
UPF1-213ENST00000601981 RNASE13Q5GAN3 156 aaKnown RBP6.88□□□□□ -1.31
UPF1-213ENST00000601981 TMEM170BQ5T4T1 132 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 C2orf91Q6ZV80 131 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 FAM19A3Q7Z5A8 133 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 C10orf126Q8N4M7 172 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 CHCHD5Q9BSY4 110 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 CDC42SE2Q9NRR3 84 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 TP73-AS1Q9UF72 201 aa6.88□□□□□ -1.31
UPF1-213ENST00000601981 DNAH6Q9C0G6 4158 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 TMEM223A0PJW6 202 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 DNAH10OSP0CZ25 163 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 SEC11AP67812 179 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 GAGE6Q13070 117 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 LBHQ53QV2 105 aaPredicted RBP6.87□□□□□ -1.31
UPF1-213ENST00000601981 WFDC10BQ8IUB3 73 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 SNHG12Q9BXW3 62 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 HIGD1BQ9P298 99 aa6.87□□□□□ -1.31
UPF1-213ENST00000601981 HYDINQ4G0P3 5121 aa6.86□□□□□ -1.31
UPF1-213ENST00000601981 IGLV5-45A0A087WSX0 123 aa6.86□□□□□ -1.31
UPF1-213ENST00000601981 M0R2N4 97 aa6.86□□□□□ -1.31
UPF1-213ENST00000601981 EREGO14944 169 aa6.86□□□□□ -1.31
UPF1-213ENST00000601981 LINC01556Q5JQF7 62 aa6.86□□□□□ -1.31
UPF1-213ENST00000601981 A0A1B0GUV1 79 aa6.85□□□□□ -1.31
UPF1-213ENST00000601981 TMEM262E9PQX1 116 aa6.85□□□□□ -1.31
UPF1-213ENST00000601981 LEPROTO15243 131 aa6.85□□□□□ -1.31
UPF1-213ENST00000601981 HERVK_113P63121 156 aa6.85□□□□□ -1.31
UPF1-213ENST00000601981 GEMIN7Q9H840 131 aaKnown RBP6.85□□□□□ -1.31
UPF1-213ENST00000601981 KMT2AQ03164 3969 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 MYMXA0A1B0GTQ4 84 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 H3BRM9 83 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 LINC00469Q8N7U9 141 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 MAPKAPK5-AS1Q8N8E1 139 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 PLEKHB2Q96CS7 222 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 TTTY13Q9BZ97 58 aa6.84□□□□□ -1.31
UPF1-213ENST00000601981 IGLV4-60A0A075B6I1 120 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 J3QQQ9 107 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3-30P01768 117 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3-33P01772 117 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3-30-3P0DP02 117 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3-30-5P0DP03 117 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 RBX1P62877 108 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 HSD52Q0P140 79 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 LINC00242Q5T6M2 205 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 C1orf134Q5TEV5 83 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 Q6ZR54 194 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 C6orf223Q8N319 242 aa6.83□□□□□ -1.32
UPF1-213ENST00000601981 TRAV13-1A0A0B4J241 112 aa6.82□□□□□ -1.32
UPF1-213ENST00000601981 IGHV1-58A0A0C4DH39 117 aa6.82□□□□□ -1.32
UPF1-213ENST00000601981 ZNF815PA8K554 130 aa6.82□□□□□ -1.32
UPF1-213ENST00000601981 LGALS3P17931 250 aaKnown RBP6.82□□□□□ -1.32
UPF1-213ENST00000601981 HINT1P49773 126 aaPredicted RBP6.82□□□□□ -1.32
UPF1-213ENST00000601981 TSPEAR-AS2P59090 65 aa6.82□□□□□ -1.32
UPF1-213ENST00000601981 MPV17L2Q567V2 206 aa6.82□□□□□ -1.32
UPF1-213ENST00000601981 CCL25O15444 150 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 CRPP02741 224 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 COX6A2Q02221 97 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 BATFQ16520 125 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 BVES-AS1Q5T3Y7 98 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 RMI2Q96E14 147 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 CDKN2A-AS1Q9UH64 79 aa6.81□□□□□ -1.32
UPF1-213ENST00000601981 TRAV8-3A0A0A6YYJ7 113 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 IGLV5-39A0A0G2JS06 123 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 IBA57-AS1B1ANH7 110 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 ANGP03950 147 aaKnown RBP6.8□□□□□ -1.32
UPF1-213ENST00000601981 SPINK8P0C7L1 97 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 TAL2Q16559 108 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 COL5A1-AS1Q5SY13 56 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 LINC00336Q6ZUF6 198 aa6.8□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3-64A0A075B6Q5 118 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 LINC00959A0A1B0GUT2 108 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 SCGB1D4Q6XE38 83 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 KRTAP17-1Q9BYP8 105 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 KRTAP1-5Q9BYS1 174 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 KLK12Q9UKR0 248 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 COX11Q9Y6N1 276 aa6.79□□□□□ -1.32
UPF1-213ENST00000601981 FRAS1Q86XX4 4008 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 SMIM1B2RUZ4 78 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 PSCAO43653 123 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 SS18Q15532 418 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 ORAOV1Q8WV07 137 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 TM2D2Q9BX73 214 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 Q9HAA7 133 aa6.78□□□□□ -1.32
UPF1-213ENST00000601981 IGHV3OR16-9A0A0B4J2B5 98 aa6.77□□□□□ -1.33
UPF1-213ENST00000601981 Q8N3U1 123 aa6.77□□□□□ -1.33
UPF1-213ENST00000601981 UBE2WQ96B02 151 aa6.77□□□□□ -1.33
UPF1-213ENST00000601981 SPANXB1Q9NS25 103 aaPredicted RBP6.77□□□□□ -1.33
UPF1-213ENST00000601981 NDUFA12Q9UI09 145 aa6.77□□□□□ -1.33
UPF1-213ENST00000601981 IGKV3OR2-268A0A0C4DH90 116 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 A6NDN8 102 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 NDUFA1O15239 70 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 MIAQ16674 131 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 CEND1Q8N111 149 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 LINC01561Q8N1V8 128 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 LINC00269Q8N2A0 174 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 HIST1H4GQ99525 98 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 C1orf43Q9BWL3 253 aa6.76□□□□□ -1.33
UPF1-213ENST00000601981 IGKV2D-24A0A075B6R9 120 aa6.75□□□□□ -1.33
UPF1-213ENST00000601981 A0A087WZ39 114 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 292.8 ms