RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 SMDT1Q9H4I9 107 aa5.87□□□□□ -1.47
VRK3-224ENST00000601849 OSTCQ9NRP0 149 aa5.87□□□□□ -1.47
VRK3-224ENST00000601849 MRPL35Q9NZE8 188 aaKnown RBP5.87□□□□□ -1.47
VRK3-224ENST00000601849 UBE2D1P51668 147 aa5.86□□□□□ -1.47
VRK3-224ENST00000601849 ORAOV1Q8WV07 137 aa5.86□□□□□ -1.47
VRK3-224ENST00000601849 C20orf78Q9BR46 151 aa5.86□□□□□ -1.47
VRK3-224ENST00000601849 NAT8BQ9UHF3 227 aa5.86□□□□□ -1.47
VRK3-224ENST00000601849 IGLV1-50A0A075B6I6 118 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 A0A1B0GW15 77 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 SMKR1H3BMG3 65 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 CKS2P33552 79 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 UBE2BP63146 152 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 RNASE13Q5GAN3 156 aaKnown RBP5.85□□□□□ -1.47
VRK3-224ENST00000601849 LINC01551Q86U37 167 aa5.85□□□□□ -1.47
VRK3-224ENST00000601849 TGIF2-C20orf24A0A0A6YYL0 155 aa5.84□□□□□ -1.47
VRK3-224ENST00000601849 H0Y9J4 135 aa5.84□□□□□ -1.47
VRK3-224ENST00000601849 S100A8P05109 93 aa5.84□□□□□ -1.47
VRK3-224ENST00000601849 RPL13AP40429 203 aaKnown RBP5.84□□□□□ -1.47
VRK3-224ENST00000601849 FAM74A3Q4VXF1 159 aa5.84□□□□□ -1.47
VRK3-224ENST00000601849 PRR26Q8N8Z3 221 aa5.84□□□□□ -1.47
VRK3-224ENST00000601849 TRBV24-1A0A075B6N3 115 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 A0A0U1RQV1 116 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 F8W036 122 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 TLX1NBP0CAT3 122 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 RAB5AP20339 215 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 HBBP68871 147 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 GAGE2EQ4V326 116 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 FAM104BQ5XKR9 115 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 UQCC3Q6UW78 93 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 Q6ZUT4 128 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 NRACQ8N912 160 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 SPANXA1Q9NS26 97 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 GAGE2DQ9UEU5 116 aa5.83□□□□□ -1.48
VRK3-224ENST00000601849 IFITM10A6NMD0 228 aa5.82□□□□□ -1.48
VRK3-224ENST00000601849 RPL23P62829 140 aaKnown RBP5.82□□□□□ -1.48
VRK3-224ENST00000601849 RPL32P62910 135 aaKnown RBP5.82□□□□□ -1.48
VRK3-224ENST00000601849 PRR4Q16378 134 aa5.82□□□□□ -1.48
VRK3-224ENST00000601849 MRPL51Q4U2R6 128 aaKnown RBP5.82□□□□□ -1.48
VRK3-224ENST00000601849 FAM19A5Q7Z5A7 132 aaPredicted RBP5.82□□□□□ -1.48
VRK3-224ENST00000601849 SLC7A5P1Q8MH63 180 aa5.82□□□□□ -1.48
VRK3-224ENST00000601849 PACRGQ96M98 296 aaPredicted RBP5.82□□□□□ -1.48
VRK3-224ENST00000601849 NAT8Q9UHE5 227 aa5.82□□□□□ -1.48
VRK3-224ENST00000601849 IGHV3OR16-9A0A0B4J2B5 98 aa5.81□□□□□ -1.48
VRK3-224ENST00000601849 TNFRSF6BO95407 300 aa5.81□□□□□ -1.48
VRK3-224ENST00000601849 IFI27P40305 119 aaPredicted RBP5.81□□□□□ -1.48
VRK3-224ENST00000601849 MRPS36P82909 103 aaKnown RBP5.81□□□□□ -1.48
VRK3-224ENST00000601849 UNQ6190/PRO20217Q6UXQ8 127 aa5.81□□□□□ -1.48
VRK3-224ENST00000601849 V9GYV3 84 aa5.81□□□□□ -1.48
VRK3-224ENST00000601849 MUC2Q02817 5179 aa5.81□□□□□ -1.48
VRK3-224ENST00000601849 TRBV30A0A0K0K1B3 111 aa5.8□□□□□ -1.48
VRK3-224ENST00000601849 M0QXV9 152 aa5.8□□□□□ -1.48
VRK3-224ENST00000601849 PPBPP02775 128 aa5.8□□□□□ -1.48
VRK3-224ENST00000601849 PRSS2P07478 247 aa5.8□□□□□ -1.48
VRK3-224ENST00000601849 RPL39P62891 51 aaKnown RBP5.8□□□□□ -1.48
VRK3-224ENST00000601849 CARHSP1Q9Y2V2 147 aaKnown RBP5.8□□□□□ -1.48
VRK3-224ENST00000601849 FAM168BA1KXE4 195 aa5.79□□□□□ -1.48
VRK3-224ENST00000601849 NDUFC2-KCTD14E9PQ53 114 aa5.79□□□□□ -1.48
VRK3-224ENST00000601849 ADIRFQ15847 76 aa5.79□□□□□ -1.48
VRK3-224ENST00000601849 SMIM2Q9BVW6 85 aa5.79□□□□□ -1.48
VRK3-224ENST00000601849 C6orf48Q9UBA6 75 aa5.79□□□□□ -1.48
VRK3-224ENST00000601849 SMIM27A0A1W2PRY6 76 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 TMEM218A2RU14 115 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 D6R8Y8 96 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 CKS1BP61024 79 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 LBHQ53QV2 105 aaPredicted RBP5.78□□□□□ -1.48
VRK3-224ENST00000601849 C10orf25Q5T742 122 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 Q6ZN92 141 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 C2orf88Q9BSF0 95 aa5.78□□□□□ -1.48
VRK3-224ENST00000601849 NUPR1O60356 82 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 ATP6V1G1O75348 118 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 ADCYAP1P18509 176 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 C6orf226Q5I0X4 101 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 TEX43Q6ZNM6 134 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 ORMDL3Q8N138 153 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 LINC01561Q8N1V8 128 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 TMEM141Q96I45 108 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 PYGO1Q9Y3Y4 419 aa5.77□□□□□ -1.49
VRK3-224ENST00000601849 A6NJY4 79 aa5.76□□□□□ -1.49
VRK3-224ENST00000601849 ZNF861PO60384 105 aa5.76□□□□□ -1.49
VRK3-224ENST00000601849 PNRC1Q12796 327 aaPredicted RBP5.76□□□□□ -1.49
VRK3-224ENST00000601849 TMEM136Q6ZRR5 245 aa5.76□□□□□ -1.49
VRK3-224ENST00000601849 SEC11CQ9BY50 192 aa5.76□□□□□ -1.49
VRK3-224ENST00000601849 APOC3P02656 99 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 S100A1P23297 94 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 KIAA0087Q14695 138 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 C4orf48Q5BLP8 95 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 C10orf91Q5T1B1 145 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 LINC00242Q5T6M2 205 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 MRPL54Q6P161 138 aaKnown RBP5.75□□□□□ -1.49
VRK3-224ENST00000601849 VCX2Q9H322 139 aa5.75□□□□□ -1.49
VRK3-224ENST00000601849 NPYP01303 97 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 KRTAP1-4P0C5Y4 121 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 G0S2P27469 103 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 RPL28P46779 137 aaKnown RBP5.74□□□□□ -1.49
VRK3-224ENST00000601849 SEC11AP67812 179 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 PAPPA-AS1Q5QFB9 102 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 C2orf82Q6UX34 121 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 ATP5L2Q7Z4Y8 100 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 KRTAP11-1Q8IUC1 163 aa5.74□□□□□ -1.49
VRK3-224ENST00000601849 ANAPC16Q96DE5 110 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms