RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 RPL36AP83881 106 aaKnown RBP10.66□□□□□ -0.7
VRK3-218ENST00000600031 GAGE4Q13068 117 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 GAGE5Q13069 117 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 RPL36ALQ969Q0 106 aaKnown RBP10.66□□□□□ -0.7
VRK3-218ENST00000600031 TM2D3Q9BRN9 247 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 GTSF1LQ9H1H1 148 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 A0A0B4J2C4 111 aa10.64□□□□□ -0.71
VRK3-218ENST00000600031 MRPS36P82909 103 aaKnown RBP10.64□□□□□ -0.71
VRK3-218ENST00000600031 HUWE1Q7Z6Z7 4374 aaKnown RBP10.64□□□□□ -0.71
VRK3-218ENST00000600031 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.64□□□□□ -0.71
VRK3-218ENST00000600031 TCL1BO95988 128 aa10.64□□□□□ -0.71
VRK3-218ENST00000600031 SFTA2Q6UW10 78 aa10.64□□□□□ -0.71
VRK3-218ENST00000600031 C11orf68Q9H3H3 251 aaKnown RBP10.64□□□□□ -0.71
VRK3-218ENST00000600031 A0A0J9YWU9 116 aa10.63□□□□□ -0.71
VRK3-218ENST00000600031 A4D1N5 150 aa10.63□□□□□ -0.71
VRK3-218ENST00000600031 ATP5G1P05496 136 aa10.63□□□□□ -0.71
VRK3-218ENST00000600031 SCGB1C2P0DMR2 95 aa10.63□□□□□ -0.71
VRK3-218ENST00000600031 TIMM21Q9BVV7 248 aa10.62□□□□□ -0.71
VRK3-218ENST00000600031 SPANXA1Q9NS26 97 aa10.62□□□□□ -0.71
VRK3-218ENST00000600031 PRO0255Q9UI72 69 aa10.62□□□□□ -0.71
VRK3-218ENST00000600031 IGHV3-64A0A075B6Q5 118 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 A0A0J9YXY3 114 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 IGHV3-33P01772 117 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 SMAGPQ0VAQ4 97 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 TEN1Q86WV5 123 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 MUSTN1Q8IVN3 82 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 PPDPFLQ8WWR9 84 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 ERG28Q9UKR5 140 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 IGHV3-30-3P0DP02 117 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 HTN3P15516 51 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 FAM104AQ969W3 186 aa10.61□□□□□ -0.71
VRK3-218ENST00000600031 F5H768 121 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 LINC00694P0DN24 101 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 DAZ4Q86SG3 579 aaKnown RBP10.6□□□□□ -0.71
VRK3-218ENST00000600031 CHCHD7Q9BUK0 85 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 DAZ3Q9NR90 486 aaKnown RBP10.6□□□□□ -0.71
VRK3-218ENST00000600031 IGHV1-58A0A0C4DH39 117 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 TINCRA0A1B0GVN0 87 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 M0QXV9 152 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 GYPEP15421 78 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 VSIG2Q96IQ7 327 aa10.6□□□□□ -0.71
VRK3-218ENST00000600031 PAX4O43316 350 aa10.59□□□□□ -0.71
VRK3-218ENST00000600031 NTM-AS1Q6ZSK4 140 aa10.59□□□□□ -0.71
VRK3-218ENST00000600031 UBE2D4Q9Y2X8 147 aa10.58□□□□□ -0.72
VRK3-218ENST00000600031 DNAH9Q9NYC9 4486 aa10.58□□□□□ -0.72
VRK3-218ENST00000600031 CFAP161Q6P656 301 aa10.58□□□□□ -0.72
VRK3-218ENST00000600031 TRAV26-1A0A087WT03 109 aa10.57□□□□□ -0.72
VRK3-218ENST00000600031 EIF4EBP3O60516 100 aaPredicted RBP10.57□□□□□ -0.72
VRK3-218ENST00000600031 Q6ZTC4 211 aa10.57□□□□□ -0.72
VRK3-218ENST00000600031 SPANXDQ9BXN6 97 aa10.57□□□□□ -0.72
VRK3-218ENST00000600031 SPANXCQ9NY87 97 aa10.57□□□□□ -0.72
VRK3-218ENST00000600031 CEMP1Q6PRD7 247 aaPredicted RBP10.57□□□□□ -0.72
VRK3-218ENST00000600031 CARD19Q96LW7 228 aa10.57□□□□□ -0.72
VRK3-218ENST00000600031 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.56□□□□□ -0.72
VRK3-218ENST00000600031 IGKV2-29A2NJV5 120 aaPredicted RBP10.56□□□□□ -0.72
VRK3-218ENST00000600031 NANOS2P60321 138 aaKnown RBP10.56□□□□□ -0.72
VRK3-218ENST00000600031 C11orf45Q8TAV5 145 aa10.56□□□□□ -0.72
VRK3-218ENST00000600031 LITAFQ99732 161 aa10.56□□□□□ -0.72
VRK3-218ENST00000600031 NDUFA12Q9UI09 145 aa10.55□□□□□ -0.72
VRK3-218ENST00000600031 TRAV8-3A0A0A6YYJ7 113 aa10.55□□□□□ -0.72
VRK3-218ENST00000600031 B9D2Q9BPU9 175 aa10.55□□□□□ -0.72
VRK3-218ENST00000600031 CDIP1Q9H305 208 aa10.55□□□□□ -0.72
VRK3-218ENST00000600031 A0A096LPF7 62 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 TRBV30A0A0K0K1B3 111 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 SLC25A20O43772 301 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 ATXN8Q156A1 80 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 Q1RN00 199 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 ANKRD29Q8N6D5 301 aa10.54□□□□□ -0.72
VRK3-218ENST00000600031 GEMIN7Q9H840 131 aaKnown RBP10.54□□□□□ -0.72
VRK3-218ENST00000600031 TIMM17BO60830 172 aa10.53□□□□□ -0.72
VRK3-218ENST00000600031 TIRAPP58753 221 aa10.53□□□□□ -0.72
VRK3-218ENST00000600031 RNASE13Q5GAN3 156 aaKnown RBP10.53□□□□□ -0.72
VRK3-218ENST00000600031 Q6ZUT4 128 aa10.53□□□□□ -0.72
VRK3-218ENST00000600031 COL7A1Q02388 2944 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 C9JAW5 83 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 H7C2G1 150 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 MIAQ16674 131 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 ZFAND6Q6FIF0 208 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 LINC01600Q96MT4 127 aa10.52□□□□□ -0.72
VRK3-218ENST00000600031 TMEM262E9PQX1 116 aa10.52□□□□□ -0.73
VRK3-218ENST00000600031 PRSS2P07478 247 aa10.52□□□□□ -0.73
VRK3-218ENST00000600031 TRBV6-8A0A0A6YYG3 113 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 SPINK8P0C7L1 97 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 IGLV5-45A0A087WSX0 123 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 A0A1B0GV72 72 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 IFITM1P13164 125 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 TMEM243Q9BU79 118 aa10.51□□□□□ -0.73
VRK3-218ENST00000600031 PRKDCP78527 4128 aaKnown RBP10.5□□□□□ -0.73
VRK3-218ENST00000600031 LINC01620Q4KN68 170 aa10.5□□□□□ -0.73
VRK3-218ENST00000600031 ADAMTSL4-AS1Q5T5F5 129 aa10.5□□□□□ -0.73
VRK3-218ENST00000600031 DEFB131BA0A096LNP1 70 aa10.49□□□□□ -0.73
VRK3-218ENST00000600031 MRPL23Q16540 153 aaKnown RBP10.49□□□□□ -0.73
VRK3-218ENST00000600031 DGAT2L7PQ6IED9 249 aa10.49□□□□□ -0.73
VRK3-218ENST00000600031 ICOSQ9Y6W8 199 aa10.49□□□□□ -0.73
VRK3-218ENST00000600031 TRIAP1O43715 76 aa10.48□□□□□ -0.73
VRK3-218ENST00000600031 COX6CP09669 75 aa10.48□□□□□ -0.73
VRK3-218ENST00000600031 MEGF8Q7Z7M0 2845 aa10.48□□□□□ -0.73
VRK3-218ENST00000600031 NDUFA1O15239 70 aa10.48□□□□□ -0.73
VRK3-218ENST00000600031 TRBV10-2A0A0K0K1G8 114 aa10.47□□□□□ -0.73
VRK3-218ENST00000600031 UBE2L6O14933 153 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms