RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 NXT2Q9NPJ8 142 aaKnown RBP11.93□□□□□ -0.5
PNKP-213ENST00000599543 PRSS3P2Q8NHM4 247 aa11.92□□□□□ -0.5
PNKP-213ENST00000599543 SPACA4Q8TDM5 124 aa11.92□□□□□ -0.5
PNKP-213ENST00000599543 A0A087WYN8 130 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 SMAGPQ0VAQ4 97 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 FOXI1Q12951 378 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 SS18Q15532 418 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 HIGD2BQ4VC39 106 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 ZC2HC1BQ5TFG8 222 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 C2orf66Q6UXQ4 117 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 SMCO4Q9NRQ5 59 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 SPANXA1Q9NS26 97 aa11.91□□□□□ -0.5
PNKP-213ENST00000599543 CSDC2Q9Y534 153 aaKnown RBP11.91□□□□□ -0.5
PNKP-213ENST00000599543 HMCN2Q8NDA2 5059 aa11.9□□□□□ -0.5
PNKP-213ENST00000599543 ORMDL2Q53FV1 153 aa11.89□□□□□ -0.51
PNKP-213ENST00000599543 CYSLTR1Q9Y271 337 aa11.89□□□□□ -0.51
PNKP-213ENST00000599543 IGLV4-3A0A075B6K6 122 aa11.88□□□□□ -0.51
PNKP-213ENST00000599543 SCO1O75880 301 aa11.88□□□□□ -0.51
PNKP-213ENST00000599543 COX6A2Q02221 97 aa11.88□□□□□ -0.51
PNKP-213ENST00000599543 GVQW2A0A096LPI5 108 aaPredicted RBP11.87□□□□□ -0.51
PNKP-213ENST00000599543 IFITM10A6NMD0 228 aa11.87□□□□□ -0.51
PNKP-213ENST00000599543 Q6ZRU5 148 aa11.87□□□□□ -0.51
PNKP-213ENST00000599543 FA2HQ7L5A8 372 aa11.87□□□□□ -0.51
PNKP-213ENST00000599543 PLAC8Q9NZF1 115 aa11.87□□□□□ -0.51
PNKP-213ENST00000599543 PLA2G2DQ9UNK4 145 aa11.87□□□□□ -0.51
PNKP-213ENST00000599543 MRPS36P82909 103 aaKnown RBP11.86□□□□□ -0.51
PNKP-213ENST00000599543 C18orf32Q8TCD1 76 aa11.86□□□□□ -0.51
PNKP-213ENST00000599543 C7orf33Q8WU49 177 aa11.86□□□□□ -0.51
PNKP-213ENST00000599543 LINC00526Q96FQ7 95 aa11.86□□□□□ -0.51
PNKP-213ENST00000599543 IGKV2-24A0A0C4DH68 120 aa11.85□□□□□ -0.51
PNKP-213ENST00000599543 C5orf38Q86SI9 138 aa11.85□□□□□ -0.51
PNKP-213ENST00000599543 URB1-AS1Q96HZ7 61 aa11.85□□□□□ -0.51
PNKP-213ENST00000599543 C1orf196B1AJZ1 125 aa11.84□□□□□ -0.51
PNKP-213ENST00000599543 MAJINQ3KP22 176 aa11.84□□□□□ -0.51
PNKP-213ENST00000599543 CD164L2Q6UWJ8 174 aa11.84□□□□□ -0.51
PNKP-213ENST00000599543 TMEM141Q96I45 108 aa11.84□□□□□ -0.51
PNKP-213ENST00000599543 PYGO1Q9Y3Y4 419 aa11.84□□□□□ -0.51
PNKP-213ENST00000599543 K7EMI3 77 aa11.83□□□□□ -0.52
PNKP-213ENST00000599543 TOMM6Q96B49 74 aa11.83□□□□□ -0.52
PNKP-213ENST00000599543 IGIPA6NJ69 53 aa11.82□□□□□ -0.52
PNKP-213ENST00000599543 PMCHL1Q16048 86 aa11.82□□□□□ -0.52
PNKP-213ENST00000599543 LINC00173Q6ZV60 143 aa11.82□□□□□ -0.52
PNKP-213ENST00000599543 LINC01546A6NGU7 62 aa11.81□□□□□ -0.52
PNKP-213ENST00000599543 COX7A2LO14548 114 aa11.81□□□□□ -0.52
PNKP-213ENST00000599543 STPG4Q8N801 248 aa11.81□□□□□ -0.52
PNKP-213ENST00000599543 SCGB3A1Q96QR1 104 aa11.81□□□□□ -0.52
PNKP-213ENST00000599543 PKIGQ9Y2B9 76 aa11.81□□□□□ -0.52
PNKP-213ENST00000599543 IGHV1-58A0A0C4DH39 117 aa11.8□□□□□ -0.52
PNKP-213ENST00000599543 TRGC2P03986 189 aa11.8□□□□□ -0.52
PNKP-213ENST00000599543 TEX43Q6ZNM6 134 aa11.8□□□□□ -0.52
PNKP-213ENST00000599543 A0A096LNI7 61 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 COLCA2A8K830 154 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 LINC00614P0C842 121 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 MT1HL1P0DM35 61 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 MALP21145 153 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 Q6ZN92 141 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 VCX2Q9H322 139 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 LINC00474Q9P2X8 69 aa11.79□□□□□ -0.52
PNKP-213ENST00000599543 A0A096LNJ9 63 aa11.78□□□□□ -0.52
PNKP-213ENST00000599543 UBE2D1P51668 147 aa11.78□□□□□ -0.52
PNKP-213ENST00000599543 CARD19Q96LW7 228 aa11.78□□□□□ -0.52
PNKP-213ENST00000599543 AMELXQ99217 191 aa11.78□□□□□ -0.52
PNKP-213ENST00000599543 UBR4Q5T4S7 5183 aa11.77□□□□□ -0.52
PNKP-213ENST00000599543 LINC00242Q5T6M2 205 aa11.77□□□□□ -0.53
PNKP-213ENST00000599543 ERASQ7Z444 233 aa11.77□□□□□ -0.53
PNKP-213ENST00000599543 C2orf88Q9BSF0 95 aa11.77□□□□□ -0.53
PNKP-213ENST00000599543 ZNF561-AS1K7EIQ3 104 aa11.76□□□□□ -0.53
PNKP-213ENST00000599543 G0S2P27469 103 aa11.76□□□□□ -0.53
PNKP-213ENST00000599543 PRR3P79522 188 aaKnown RBP11.76□□□□□ -0.53
PNKP-213ENST00000599543 TIMM17AQ99595 171 aa11.76□□□□□ -0.53
PNKP-213ENST00000599543 IGHV3OR16-9A0A0B4J2B5 98 aa11.75□□□□□ -0.53
PNKP-213ENST00000599543 IGLV4-69A0A075B6H9 119 aa11.74□□□□□ -0.53
PNKP-213ENST00000599543 A0A0J9YXV3 536 aa11.73□□□□□ -0.53
PNKP-213ENST00000599543 SYCNQ0VAF6 134 aa11.73□□□□□ -0.53
PNKP-213ENST00000599543 ORAOV1Q8WV07 137 aa11.73□□□□□ -0.53
PNKP-213ENST00000599543 HBDP02042 147 aa11.72□□□□□ -0.53
PNKP-213ENST00000599543 RAB5BP61020 215 aa11.72□□□□□ -0.53
PNKP-213ENST00000599543 SPAG11BQ08648 103 aa11.72□□□□□ -0.53
PNKP-213ENST00000599543 BAGE3Q86Y29 109 aa11.72□□□□□ -0.53
PNKP-213ENST00000599543 NPSP0C0P6 89 aa11.71□□□□□ -0.53
PNKP-213ENST00000599543 TNXBP22105 4242 aa11.71□□□□□ -0.54
PNKP-213ENST00000599543 NDUFA6P56556 154 aa11.7□□□□□ -0.54
PNKP-213ENST00000599543 PAPPA-AS1Q5QFB9 102 aa11.7□□□□□ -0.54
PNKP-213ENST00000599543 CST9LQ9H4G1 147 aa11.7□□□□□ -0.54
PNKP-213ENST00000599543 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.69□□□□□ -0.54
PNKP-213ENST00000599543 APOMO95445 188 aa11.69□□□□□ -0.54
PNKP-213ENST00000599543 PDZD11Q5EBL8 140 aa11.69□□□□□ -0.54
PNKP-213ENST00000599543 FAM19A2Q8N3H0 131 aa11.69□□□□□ -0.54
PNKP-213ENST00000599543 A0A087WZ39 114 aa11.68□□□□□ -0.54
PNKP-213ENST00000599543 LOC107984640A0A0U1RRK4 108 aa11.68□□□□□ -0.54
PNKP-213ENST00000599543 PTTG1IPP53801 180 aa11.68□□□□□ -0.54
PNKP-213ENST00000599543 CAMK2N2Q96S95 79 aa11.68□□□□□ -0.54
PNKP-213ENST00000599543 GEMIN7Q9H840 131 aaKnown RBP11.68□□□□□ -0.54
PNKP-213ENST00000599543 CDKN2A-AS1Q9UH64 79 aa11.68□□□□□ -0.54
PNKP-213ENST00000599543 SERF1AO75920 110 aa11.67□□□□□ -0.54
PNKP-213ENST00000599543 LINC00310P59036 64 aa11.67□□□□□ -0.54
PNKP-213ENST00000599543 GAGE2BQ13066 116 aa11.67□□□□□ -0.54
PNKP-213ENST00000599543 PMVKQ15126 192 aa11.67□□□□□ -0.54
PNKP-213ENST00000599543 CHCHD1Q96BP2 118 aaKnown RBP11.67□□□□□ -0.54
PNKP-213ENST00000599543 LINC01549A6NIU2 74 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms