RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 OPRPNQ99935 248 aaPredicted RBP8.02□□□□□ -1.13
UPF1-203ENST00000594504 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.02□□□□□ -1.13
UPF1-203ENST00000594504 LRP1Q07954 4544 aaKnown RBP8.01□□□□□ -1.13
UPF1-203ENST00000594504 IGLV4-3A0A075B6K6 122 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 hDV102S1A0JD36 115 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 LINC01546A6NGU7 62 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 NPSP0C0P6 89 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 C15orf56Q8N910 161 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 C9orf163Q8N9P6 203 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 TMEM141Q96I45 108 aa8.01□□□□□ -1.13
UPF1-203ENST00000594504 IFITM10A6NMD0 228 aa8□□□□□ -1.13
UPF1-203ENST00000594504 Q6ZN92 141 aa8□□□□□ -1.13
UPF1-203ENST00000594504 FA2HQ7L5A8 372 aa8□□□□□ -1.13
UPF1-203ENST00000594504 TOMM6Q96B49 74 aa8□□□□□ -1.13
UPF1-203ENST00000594504 AP5S1Q9NUS5 200 aa8□□□□□ -1.13
UPF1-203ENST00000594504 GVQW2A0A096LPI5 108 aaPredicted RBP7.99□□□□□ -1.13
UPF1-203ENST00000594504 IGHV1-58A0A0C4DH39 117 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 LINC01549A6NIU2 74 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 IGIPA6NJ69 53 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 COX7A2LO14548 114 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 CNBPP62633 177 aaKnown RBP7.99□□□□□ -1.13
UPF1-203ENST00000594504 SDIM1Q6ZPB5 146 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 C18orf32Q8TCD1 76 aa7.99□□□□□ -1.13
UPF1-203ENST00000594504 FAT3Q8TDW7 4589 aa7.98□□□□□ -1.13
UPF1-203ENST00000594504 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.98□□□□□ -1.13
UPF1-203ENST00000594504 PAPPA-AS1Q5QFB9 102 aa7.98□□□□□ -1.13
UPF1-203ENST00000594504 TEX43Q6ZNM6 134 aa7.98□□□□□ -1.13
UPF1-203ENST00000594504 TIMM17AQ99595 171 aa7.98□□□□□ -1.13
UPF1-203ENST00000594504 C2orf88Q9BSF0 95 aa7.98□□□□□ -1.13
UPF1-203ENST00000594504 MALP21145 153 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 HIGD2BQ4VC39 106 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 ERASQ7Z444 233 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 AMELXQ99217 191 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 VCX2Q9H322 139 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 PLA2G2DQ9UNK4 145 aa7.97□□□□□ -1.13
UPF1-203ENST00000594504 SLPIP03973 132 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 LINC00614P0C842 121 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 RAB5BP61020 215 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 LINC00173Q6ZV60 143 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 SCGB3A1Q96QR1 104 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 PKHD1L1Q86WI1 4243 aa7.96□□□□□ -1.14
UPF1-203ENST00000594504 IGHV3OR16-9A0A0B4J2B5 98 aa7.95□□□□□ -1.14
UPF1-203ENST00000594504 APOMO95445 188 aa7.95□□□□□ -1.14
UPF1-203ENST00000594504 UBE2D1P51668 147 aa7.95□□□□□ -1.14
UPF1-203ENST00000594504 C5orf38Q86SI9 138 aa7.95□□□□□ -1.14
UPF1-203ENST00000594504 DPH3Q96FX2 82 aa7.95□□□□□ -1.14
UPF1-203ENST00000594504 ZNF561-AS1K7EIQ3 104 aa7.94□□□□□ -1.14
UPF1-203ENST00000594504 CHTF8P0CG12 524 aa7.94□□□□□ -1.14
UPF1-203ENST00000594504 LINC00242Q5T6M2 205 aa7.94□□□□□ -1.14
UPF1-203ENST00000594504 URB1-AS1Q96HZ7 61 aa7.94□□□□□ -1.14
UPF1-203ENST00000594504 IGHV3-64A0A075B6Q5 118 aa7.93□□□□□ -1.14
UPF1-203ENST00000594504 COLCA2A8K830 154 aa7.93□□□□□ -1.14
UPF1-203ENST00000594504 MT1HL1P0DM35 61 aa7.93□□□□□ -1.14
UPF1-203ENST00000594504 ZC2HC1BQ5TFG8 222 aa7.93□□□□□ -1.14
UPF1-203ENST00000594504 A0A087WZ39 114 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 A0A096LNJ9 63 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 HBDP02042 147 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 TRGC2P03986 189 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 SEC11AP67812 179 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 CIRBPQ14011 172 aaKnown RBP7.92□□□□□ -1.14
UPF1-203ENST00000594504 FAM19A3Q7Z5A8 133 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 OR10D4PQ8NGN7 298 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 HMCN2Q8NDA2 5059 aa7.92□□□□□ -1.14
UPF1-203ENST00000594504 IGLV4-69A0A075B6H9 119 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 A0A087WYN8 130 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.91□□□□□ -1.14
UPF1-203ENST00000594504 COX6A2Q02221 97 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 SPAG11BQ08648 103 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 CHCHD1Q96BP2 118 aaKnown RBP7.91□□□□□ -1.14
UPF1-203ENST00000594504 LINC00526Q96FQ7 95 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 CARD19Q96LW7 228 aa7.91□□□□□ -1.14
UPF1-203ENST00000594504 HERVK_113P63121 156 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 SYCNQ0VAF6 134 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 PMCHL1Q16048 86 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 LINC01561Q8N1V8 128 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 ORAOV1Q8WV07 137 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 C2orf48Q96LS8 159 aa7.9□□□□□ -1.14
UPF1-203ENST00000594504 F8WDY8 70 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 SCO1O75880 301 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 PMVKQ15126 192 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 PDZD11Q5EBL8 140 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 Q6ZRU5 148 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 CAMK2N2Q96S95 79 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 CST9LQ9H4G1 147 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 GEMIN7Q9H840 131 aaKnown RBP7.89□□□□□ -1.15
UPF1-203ENST00000594504 PKIGQ9Y2B9 76 aa7.89□□□□□ -1.15
UPF1-203ENST00000594504 A0A0J9YXV3 536 aa7.88□□□□□ -1.15
UPF1-203ENST00000594504 ATP5LO75964 103 aa7.88□□□□□ -1.15
UPF1-203ENST00000594504 BAGE3Q86Y29 109 aa7.88□□□□□ -1.15
UPF1-203ENST00000594504 SPACA4Q8TDM5 124 aa7.88□□□□□ -1.15
UPF1-203ENST00000594504 UBR4Q5T4S7 5183 aa7.87□□□□□ -1.15
UPF1-203ENST00000594504 TINCRA0A1B0GVN0 87 aa7.87□□□□□ -1.15
UPF1-203ENST00000594504 HSBP1O75506 76 aa7.86□□□□□ -1.15
UPF1-203ENST00000594504 LINC00469Q8N7U9 141 aa7.86□□□□□ -1.15
UPF1-203ENST00000594504 PLAC8Q9NZF1 115 aa7.86□□□□□ -1.15
UPF1-203ENST00000594504 CDKN2A-AS1Q9UH64 79 aa7.86□□□□□ -1.15
UPF1-203ENST00000594504 IGLV5-45A0A087WSX0 123 aa7.85□□□□□ -1.15
UPF1-203ENST00000594504 IGKV2-24A0A0C4DH68 120 aa7.85□□□□□ -1.15
UPF1-203ENST00000594504 NDUFA1O15239 70 aa7.85□□□□□ -1.15
UPF1-203ENST00000594504 NDUFA6P56556 154 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms