RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 TAGLN2P37802 199 aaKnown RBP11.76□□□□□ -0.53
CCDC40-206ENST00000572083 TMEM241Q24JQ0 296 aa11.76□□□□□ -0.53
CCDC40-206ENST00000572083 NRACQ8N912 160 aa11.76□□□□□ -0.53
CCDC40-206ENST00000572083 TIMM21Q9BVV7 248 aa11.76□□□□□ -0.53
CCDC40-206ENST00000572083 RPL39P62891 51 aaKnown RBP11.74□□□□□ -0.53
CCDC40-206ENST00000572083 TMEM18Q96B42 140 aa11.74□□□□□ -0.53
CCDC40-206ENST00000572083 FAM104AQ969W3 186 aa11.73□□□□□ -0.53
CCDC40-206ENST00000572083 ZNF861PO60384 105 aa11.72□□□□□ -0.53
CCDC40-206ENST00000572083 CEBPGP53567 150 aa11.72□□□□□ -0.53
CCDC40-206ENST00000572083 C9orf129Q5T035 196 aaKnown RBP11.72□□□□□ -0.53
CCDC40-206ENST00000572083 BATF3Q9NR55 127 aa11.72□□□□□ -0.53
CCDC40-206ENST00000572083 PPP1R17O96001 155 aa11.71□□□□□ -0.53
CCDC40-206ENST00000572083 A0A087X002 238 aa11.7□□□□□ -0.54
CCDC40-206ENST00000572083 IFITM10A6NMD0 228 aa11.7□□□□□ -0.54
CCDC40-206ENST00000572083 TMEM250H0YL14 139 aa11.7□□□□□ -0.54
CCDC40-206ENST00000572083 LCE2DQ5TA82 110 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-206ENST00000572083 PPP1R2P9O14990 202 aa11.69□□□□□ -0.54
CCDC40-206ENST00000572083 KIAA0087Q14695 138 aa11.69□□□□□ -0.54
CCDC40-206ENST00000572083 C2orf82Q6UX34 121 aa11.69□□□□□ -0.54
CCDC40-206ENST00000572083 NDUFC2-KCTD14E9PQ53 114 aa11.68□□□□□ -0.54
CCDC40-206ENST00000572083 TGIF2-C20orf24A0A0A6YYL0 155 aa11.67□□□□□ -0.54
CCDC40-206ENST00000572083 TRBV30A0A0K0K1B3 111 aa11.67□□□□□ -0.54
CCDC40-206ENST00000572083 HBBP68871 147 aa11.67□□□□□ -0.54
CCDC40-206ENST00000572083 MRPL51Q4U2R6 128 aaKnown RBP11.67□□□□□ -0.54
CCDC40-206ENST00000572083 SPANXA1Q9NS26 97 aa11.67□□□□□ -0.54
CCDC40-206ENST00000572083 RIGQ13278 110 aa11.66□□□□□ -0.54
CCDC40-206ENST00000572083 LINC01551Q86U37 167 aa11.66□□□□□ -0.54
CCDC40-206ENST00000572083 RETNLBQ9BQ08 111 aa11.66□□□□□ -0.54
CCDC40-206ENST00000572083 MRPS36P82909 103 aaKnown RBP11.65□□□□□ -0.54
CCDC40-206ENST00000572083 TYMSOSQ8TAI1 123 aa11.65□□□□□ -0.54
CCDC40-206ENST00000572083 NUPR1O60356 82 aa11.64□□□□□ -0.55
CCDC40-206ENST00000572083 SLC51BQ86UW2 128 aa11.64□□□□□ -0.55
CCDC40-206ENST00000572083 PACRGQ96M98 296 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-206ENST00000572083 SMIM7Q9BQ49 75 aa11.64□□□□□ -0.55
CCDC40-206ENST00000572083 C20orf78Q9BR46 151 aa11.64□□□□□ -0.55
CCDC40-206ENST00000572083 CTDSP1Q9GZU7 261 aa11.64□□□□□ -0.55
CCDC40-206ENST00000572083 FAM104BQ5XKR9 115 aa11.63□□□□□ -0.55
CCDC40-206ENST00000572083 OSTCQ9NRP0 149 aa11.63□□□□□ -0.55
CCDC40-206ENST00000572083 TCAPO15273 167 aa11.62□□□□□ -0.55
CCDC40-206ENST00000572083 LINC00469Q8N7U9 141 aa11.62□□□□□ -0.55
CCDC40-206ENST00000572083 C22orf24Q9Y442 160 aa11.62□□□□□ -0.55
CCDC40-206ENST00000572083 V9GYV3 84 aa11.62□□□□□ -0.55
CCDC40-206ENST00000572083 CRYGAP11844 174 aa11.61□□□□□ -0.55
CCDC40-206ENST00000572083 RPL32P62910 135 aaKnown RBP11.61□□□□□ -0.55
CCDC40-206ENST00000572083 SMIM2Q9BVW6 85 aa11.61□□□□□ -0.55
CCDC40-206ENST00000572083 TRBV24-1A0A075B6N3 115 aa11.6□□□□□ -0.55
CCDC40-206ENST00000572083 TNFRSF6BO95407 300 aa11.6□□□□□ -0.55
CCDC40-206ENST00000572083 CKS2P33552 79 aa11.6□□□□□ -0.55
CCDC40-206ENST00000572083 LINC00242Q5T6M2 205 aa11.6□□□□□ -0.55
CCDC40-206ENST00000572083 CDIP1Q9H305 208 aa11.6□□□□□ -0.55
CCDC40-206ENST00000572083 XAGE1AQ9HD64 81 aa11.59□□□□□ -0.55
CCDC40-206ENST00000572083 ANAPC11Q9NYG5 84 aa11.59□□□□□ -0.55
CCDC40-206ENST00000572083 LINC00862A6NCI5 91 aa11.58□□□□□ -0.56
CCDC40-206ENST00000572083 RPL28P46779 137 aaKnown RBP11.58□□□□□ -0.56
CCDC40-206ENST00000572083 NAT8BQ9UHF3 227 aa11.58□□□□□ -0.56
CCDC40-206ENST00000572083 LBHQ53QV2 105 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-206ENST00000572083 ZNF727A8MUV8 499 aa11.56□□□□□ -0.56
CCDC40-206ENST00000572083 D6R8Y8 96 aa11.56□□□□□ -0.56
CCDC40-206ENST00000572083 IFI27P40305 119 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-206ENST00000572083 IGLV4-3A0A075B6K6 122 aa11.55□□□□□ -0.56
CCDC40-206ENST00000572083 BCE1O60756 84 aa11.55□□□□□ -0.56
CCDC40-206ENST00000572083 NPYP01303 97 aa11.55□□□□□ -0.56
CCDC40-206ENST00000572083 TPRXLQ17RH7 258 aa11.55□□□□□ -0.56
CCDC40-206ENST00000572083 KRTAP13-2Q52LG2 175 aa11.55□□□□□ -0.56
CCDC40-206ENST00000572083 EIF5A2Q9GZV4 153 aaKnown RBP11.55□□□□□ -0.56
CCDC40-206ENST00000572083 BLOC1S1P78537 153 aa11.54□□□□□ -0.56
CCDC40-206ENST00000572083 ALKAL2Q6UX46 152 aa11.54□□□□□ -0.56
CCDC40-206ENST00000572083 TOMM7Q9P0U1 55 aa11.54□□□□□ -0.56
CCDC40-206ENST00000572083 FAM74A3Q4VXF1 159 aa11.53□□□□□ -0.56
CCDC40-206ENST00000572083 MRPL55Q7Z7F7 128 aaKnown RBP11.53□□□□□ -0.56
CCDC40-206ENST00000572083 PRSS2P07478 247 aa11.52□□□□□ -0.57
CCDC40-206ENST00000572083 CKS1BP61024 79 aa11.52□□□□□ -0.57
CCDC40-206ENST00000572083 LINC00304Q8N9R0 145 aa11.52□□□□□ -0.57
CCDC40-206ENST00000572083 TMEM141Q96I45 108 aa11.52□□□□□ -0.57
CCDC40-206ENST00000572083 ZC2HC1BQ5TFG8 222 aa11.51□□□□□ -0.57
CCDC40-206ENST00000572083 LINC01561Q8N1V8 128 aa11.51□□□□□ -0.57
CCDC40-206ENST00000572083 PYGO1Q9Y3Y4 419 aa11.51□□□□□ -0.57
CCDC40-206ENST00000572083 IGLV7-46A0A075B6I9 117 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 RPL37AP8A6NKH3 93 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 TEX43Q6ZNM6 134 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 LINC00173Q6ZV60 143 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 TCTE3Q8IZS6 198 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 TP73-AS1Q9UF72 201 aa11.5□□□□□ -0.57
CCDC40-206ENST00000572083 SMIM27A0A1W2PRY6 76 aa11.49□□□□□ -0.57
CCDC40-206ENST00000572083 SRP19P09132 144 aaKnown RBP11.49□□□□□ -0.57
CCDC40-206ENST00000572083 RAB5AP20339 215 aa11.49□□□□□ -0.57
CCDC40-206ENST00000572083 C6orf226Q5I0X4 101 aa11.49□□□□□ -0.57
CCDC40-206ENST00000572083 MRPL54Q6P161 138 aaKnown RBP11.49□□□□□ -0.57
CCDC40-206ENST00000572083 A0A1B0GW15 77 aa11.48□□□□□ -0.57
CCDC40-206ENST00000572083 Q6ZN92 141 aa11.48□□□□□ -0.57
CCDC40-206ENST00000572083 Q8IZM0 81 aa11.48□□□□□ -0.57
CCDC40-206ENST00000572083 RPL23P62829 140 aaKnown RBP11.47□□□□□ -0.57
CCDC40-206ENST00000572083 ADIRFQ15847 76 aa11.47□□□□□ -0.57
CCDC40-206ENST00000572083 LINC00167Q96N53 147 aa11.47□□□□□ -0.57
CCDC40-206ENST00000572083 C2orf88Q9BSF0 95 aa11.47□□□□□ -0.57
CCDC40-206ENST00000572083 GAGE10A6NGK3 116 aa11.46□□□□□ -0.57
CCDC40-206ENST00000572083 ALKBH7Q9BT30 221 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-206ENST00000572083 F8W036 122 aa11.45□□□□□ -0.58
CCDC40-206ENST00000572083 PPBPP02775 128 aa11.44□□□□□ -0.58
CCDC40-206ENST00000572083 UBE2AP49459 152 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms