RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PPDPFQ9H3Y8 114 aa3.36□□□□□ -1.87
VPS53-208ENST00000570650 GAGE2DQ9UEU5 116 aa3.36□□□□□ -1.87
VPS53-208ENST00000570650 BORCS7-ASMTA0A0B4J1R7 106 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 NDUFA1O15239 70 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 PFDN1O60925 122 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 TSHBP01222 138 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 DEFA1P59665 94 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 CTAG1AP78358 180 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 TMEM241Q24JQ0 296 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 RPL7L1Q6DKI1 246 aaKnown RBP3.35□□□□□ -1.87
VPS53-208ENST00000570650 TMUB2Q71RG4 321 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 OR10D4PQ8NGN7 298 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 KRTAP4-1Q9BYQ7 146 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 SMDT1Q9H4I9 107 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 PAM16Q9Y3D7 125 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 ALG5Q9Y673 324 aa3.35□□□□□ -1.87
VPS53-208ENST00000570650 TRAV13-1A0A0B4J241 112 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 C7orf77A4D0Y5 90 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 IFNA1P01562 189 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 CFC1BP0CG36 223 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 CTRLP40313 264 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 RPL35P42766 123 aaKnown RBP3.34□□□□□ -1.87
VPS53-208ENST00000570650 RPL28P46779 137 aaKnown RBP3.34□□□□□ -1.87
VPS53-208ENST00000570650 TEX261Q6UWH6 196 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 ORAOV1Q8WV07 137 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 FAM210AQ96ND0 272 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 MARVELD1Q9BSK0 173 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 TMEM242Q9NWH2 141 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 C6orf48Q9UBA6 75 aa3.34□□□□□ -1.87
VPS53-208ENST00000570650 TRBV6-5A0A0K0K1A5 114 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 SEC61BP60468 96 aaKnown RBP3.33□□□□□ -1.88
VPS53-208ENST00000570650 SMAGPQ0VAQ4 97 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 KRTAP13-2Q52LG2 175 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 PAPPA-AS1Q5QFB9 102 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 UNQ6190/PRO20217Q6UXQ8 127 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 SMIM15Q7Z3B0 74 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 C9orf62Q8N4C0 152 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 LINC00337Q8N6G1 96 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 CNFNQ9BYD5 112 aa3.33□□□□□ -1.88
VPS53-208ENST00000570650 CSDC2Q9Y534 153 aaKnown RBP3.33□□□□□ -1.88
VPS53-208ENST00000570650 CENPWQ5EE01 88 aa3.32□□□□□ -1.88
VPS53-208ENST00000570650 RNASE13Q5GAN3 156 aaKnown RBP3.32□□□□□ -1.88
VPS53-208ENST00000570650 C9orf129Q5T035 196 aaKnown RBP3.32□□□□□ -1.88
VPS53-208ENST00000570650 FP248Q71RG6 208 aaPredicted RBP3.32□□□□□ -1.88
VPS53-208ENST00000570650 SMIM12Q96EX1 92 aa3.32□□□□□ -1.88
VPS53-208ENST00000570650 ST20Q9HBF5 79 aa3.32□□□□□ -1.88
VPS53-208ENST00000570650 CYTL1Q9NRR1 136 aa3.32□□□□□ -1.88
VPS53-208ENST00000570650 ANAPC11Q9NYG5 84 aa3.32□□□□□ -1.88
VPS53-208ENST00000570650 IGKV2D-26A0A0A0MRZ7 120 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 A0A1B0GV50 99 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 NDUFC2-KCTD14E9PQ53 114 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 BCE1O60756 84 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 UPK1BO75841 260 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 MT3P25713 68 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 KRTAP10-7P60409 375 aaPredicted RBP3.31□□□□□ -1.88
VPS53-208ENST00000570650 MT1HP80294 61 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 KRTAP13-3Q3SY46 172 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 FAM229BQ4G0N7 80 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 LBHQ53QV2 105 aaPredicted RBP3.31□□□□□ -1.88
VPS53-208ENST00000570650 LINC00242Q5T6M2 205 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 Q6ZUT4 128 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 KCNRGQ8N5I3 272 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 SFT2D1Q8WV19 159 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 C11orf52Q96A22 123 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 RNASE7Q9H1E1 156 aaKnown RBP3.31□□□□□ -1.88
VPS53-208ENST00000570650 UBE2D4Q9Y2X8 147 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 C22orf24Q9Y442 160 aa3.31□□□□□ -1.88
VPS53-208ENST00000570650 IGHV3OR16-9A0A0B4J2B5 98 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 TRBV30A0A0K0K1B3 111 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 TRBV27A0A0K0K1C4 114 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 FCER1GP30273 86 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 GNG4P50150 75 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 POLR2KP53803 58 aaKnown RBP3.3□□□□□ -1.88
VPS53-208ENST00000570650 FOXA3P55318 350 aaPredicted RBP3.3□□□□□ -1.88
VPS53-208ENST00000570650 CCL20P78556 96 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 MBD3L1Q8WWY6 194 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 S100ZQ8WXG8 99 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 PACRGQ96M98 296 aaPredicted RBP3.3□□□□□ -1.88
VPS53-208ENST00000570650 BIN3Q9NQY0 253 aa3.3□□□□□ -1.88
VPS53-208ENST00000570650 FXYD6-FXYD2A0A087WZ82 144 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 RAB19A4D1S5 217 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 KIAA0087Q14695 138 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 Q5BKY6 102 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 LINC00299Q6ZSB3 139 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 MRPL55Q7Z7F7 128 aaKnown RBP3.29□□□□□ -1.88
VPS53-208ENST00000570650 SMIM29Q86T20 159 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 FAM213BQ8TBF2 198 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 TP73-AS1Q9UF72 201 aa3.29□□□□□ -1.88
VPS53-208ENST00000570650 GAGE10A6NGK3 116 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 UMAD1C9J7I0 102 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 VCYO14598 125 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 IFITM3Q01628 133 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 KRTAP19-2Q3LHN2 52 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 SPAG11AQ6PDA7 123 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 TIMM21Q9BVV7 248 aa3.28□□□□□ -1.88
VPS53-208ENST00000570650 ZNF727A8MUV8 499 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 GIPP09681 153 aaPredicted RBP3.27□□□□□ -1.89
VPS53-208ENST00000570650 UBE2AP49459 152 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 C2orf82Q6UX34 121 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 KRTAP13-1Q8IUC0 172 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms