RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 DEFB114Q30KQ6 69 aa10.42□□□□□ -0.74
VPS35-210ENST00000568784 PLA2G2AP14555 144 aa10.42□□□□□ -0.74
VPS35-210ENST00000568784 DNAJC30Q96LL9 226 aa10.42□□□□□ -0.74
VPS35-210ENST00000568784 SOSTDC1Q6X4U4 206 aa10.42□□□□□ -0.74
VPS35-210ENST00000568784 SMIM1B2RUZ4 78 aa10.41□□□□□ -0.74
VPS35-210ENST00000568784 SND1-IT1Q9HBX3 110 aa10.41□□□□□ -0.74
VPS35-210ENST00000568784 GCN1Q92616 2671 aaKnown RBP10.41□□□□□ -0.74
VPS35-210ENST00000568784 TIRAPP58753 221 aa10.4□□□□□ -0.74
VPS35-210ENST00000568784 C9orf153Q5TBE3 101 aa10.4□□□□□ -0.74
VPS35-210ENST00000568784 Q6YL49 198 aa10.4□□□□□ -0.74
VPS35-210ENST00000568784 Q96MF0 132 aa10.4□□□□□ -0.74
VPS35-210ENST00000568784 PRORYQ9H606 182 aa10.4□□□□□ -0.74
VPS35-210ENST00000568784 C11orf72Q8NBR9 251 aa10.4□□□□□ -0.75
VPS35-210ENST00000568784 ODF3L2Q3SX64 289 aa10.39□□□□□ -0.75
VPS35-210ENST00000568784 C6orf226Q5I0X4 101 aa10.39□□□□□ -0.75
VPS35-210ENST00000568784 IGKV3D-7A0A0C4DH55 119 aa10.39□□□□□ -0.75
VPS35-210ENST00000568784 KRTAP10-9P60411 292 aa10.38□□□□□ -0.75
VPS35-210ENST00000568784 EDA2RQ9HAV5 297 aa10.38□□□□□ -0.75
VPS35-210ENST00000568784 SLPIP03973 132 aa10.38□□□□□ -0.75
VPS35-210ENST00000568784 HERV-K104P63124 156 aa10.38□□□□□ -0.75
VPS35-210ENST00000568784 C14orf132Q9NPU4 83 aa10.38□□□□□ -0.75
VPS35-210ENST00000568784 J3QLI3 93 aa10.37□□□□□ -0.75
VPS35-210ENST00000568784 XCL1P47992 114 aa10.37□□□□□ -0.75
VPS35-210ENST00000568784 NTM-AS1Q6ZSK4 140 aa10.37□□□□□ -0.75
VPS35-210ENST00000568784 C1orf158Q8N1D5 194 aa10.37□□□□□ -0.75
VPS35-210ENST00000568784 COX7B2Q8TF08 81 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 CCL24O00175 119 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 TIMM17BO60830 172 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 FAM218AQ96MZ4 157 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 LECT2O14960 151 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 IGHV4-31P0DP07 118 aa10.36□□□□□ -0.75
VPS35-210ENST00000568784 M0QXV9 152 aa10.35□□□□□ -0.75
VPS35-210ENST00000568784 SVIPQ8NHG7 77 aa10.35□□□□□ -0.75
VPS35-210ENST00000568784 CDC42SE2Q9NRR3 84 aa10.35□□□□□ -0.75
VPS35-210ENST00000568784 TRAV13-2A0A0B4J235 113 aa10.35□□□□□ -0.75
VPS35-210ENST00000568784 C4orf3Q8WVX3 66 aa10.35□□□□□ -0.75
VPS35-210ENST00000568784 NIPBLQ6KC79 2804 aaeCLIP10.35□□□□□ -0.75
VPS35-210ENST00000568784 SDIM1Q6ZPB5 146 aa10.34□□□□□ -0.75
VPS35-210ENST00000568784 HIST1H4AP62805 103 aaKnown RBP10.34□□□□□ -0.75
VPS35-210ENST00000568784 HIST2H2BCQ6DN03 193 aa10.34□□□□□ -0.75
VPS35-210ENST00000568784 ESM1Q9NQ30 184 aa10.33□□□□□ -0.76
VPS35-210ENST00000568784 ITPR3Q14573 2671 aa10.33□□□□□ -0.76
VPS35-210ENST00000568784 INAFM2P0DMQ5 153 aa10.33□□□□□ -0.76
VPS35-210ENST00000568784 MALP21145 153 aa10.32□□□□□ -0.76
VPS35-210ENST00000568784 RNF152Q8N8N0 203 aa10.32□□□□□ -0.76
VPS35-210ENST00000568784 Q6Q795 121 aa10.32□□□□□ -0.76
VPS35-210ENST00000568784 BEAN1Q3B7T3 259 aa10.32□□□□□ -0.76
VPS35-210ENST00000568784 IGLV4-60A0A075B6I1 120 aa10.31□□□□□ -0.76
VPS35-210ENST00000568784 IGLV10-54A0A075B6I4 117 aa10.31□□□□□ -0.76
VPS35-210ENST00000568784 IGLV5-39A0A0G2JS06 123 aa10.31□□□□□ -0.76
VPS35-210ENST00000568784 LINC00643Q86TS7 51 aa10.31□□□□□ -0.76
VPS35-210ENST00000568784 LINC00337Q8N6G1 96 aa10.31□□□□□ -0.76
VPS35-210ENST00000568784 NCR3O14931 201 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 SMIM11BQ8TCY0 68 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 A0A087WYN8 130 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 TRBV10-1A0A0K0K1A3 114 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 ACYP1P07311 99 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 SMCR5Q8TEV8 140 aa10.3□□□□□ -0.76
VPS35-210ENST00000568784 MRPL23Q16540 153 aaKnown RBP10.3□□□□□ -0.76
VPS35-210ENST00000568784 TRACP01848 142 aa10.29□□□□□ -0.76
VPS35-210ENST00000568784 KLK5Q9Y337 293 aaPredicted RBP10.29□□□□□ -0.76
VPS35-210ENST00000568784 FAM240AA0A1B0GVK7 77 aa10.29□□□□□ -0.76
VPS35-210ENST00000568784 IGLV5-45A0A087WSX0 123 aa10.28□□□□□ -0.76
VPS35-210ENST00000568784 HTN3P15516 51 aa10.28□□□□□ -0.76
VPS35-210ENST00000568784 CCL18P55774 89 aa10.28□□□□□ -0.76
VPS35-210ENST00000568784 DEFB4AO15263 64 aa10.28□□□□□ -0.76
VPS35-210ENST00000568784 PRR3P79522 188 aaKnown RBP10.27□□□□□ -0.77
VPS35-210ENST00000568784 SHISA2Q6UWI4 295 aa10.27□□□□□ -0.77
VPS35-210ENST00000568784 TMEM86BQ8N661 226 aa10.27□□□□□ -0.77
VPS35-210ENST00000568784 SETXQ7Z333 2677 aaKnown RBP10.27□□□□□ -0.77
VPS35-210ENST00000568784 A0A087WVE0 104 aa10.26□□□□□ -0.77
VPS35-210ENST00000568784 DNAJC9-AS1A6NH13 148 aa10.26□□□□□ -0.77
VPS35-210ENST00000568784 GYPEP15421 78 aa10.26□□□□□ -0.77
VPS35-210ENST00000568784 F5H768 121 aa10.25□□□□□ -0.77
VPS35-210ENST00000568784 DEFB113Q30KQ7 82 aa10.25□□□□□ -0.77
VPS35-210ENST00000568784 A0A1B0GX51 115 aa10.24□□□□□ -0.77
VPS35-210ENST00000568784 CFAP161Q6P656 301 aa10.24□□□□□ -0.77
VPS35-210ENST00000568784 WFDC11Q8NEX6 87 aa10.24□□□□□ -0.77
VPS35-210ENST00000568784 C16orf74Q96GX8 76 aa10.24□□□□□ -0.77
VPS35-210ENST00000568784 TRBV6-8A0A0A6YYG3 113 aa10.23□□□□□ -0.77
VPS35-210ENST00000568784 SS18Q15532 418 aa10.23□□□□□ -0.77
VPS35-210ENST00000568784 TRBV7-7A0A0K0K1E9 115 aa10.23□□□□□ -0.77
VPS35-210ENST00000568784 PF4P02776 101 aa10.23□□□□□ -0.77
VPS35-210ENST00000568784 C9orf129Q5T035 196 aaKnown RBP10.23□□□□□ -0.77
VPS35-210ENST00000568784 hADV29S1A0JD25 119 aa10.22□□□□□ -0.77
VPS35-210ENST00000568784 IGKV2-28A0A075B6P5 120 aa10.22□□□□□ -0.77
VPS35-210ENST00000568784 IGKV2D-28P01615 120 aa10.22□□□□□ -0.77
VPS35-210ENST00000568784 USP24Q9UPU5 2620 aa10.21□□□□□ -0.77
VPS35-210ENST00000568784 WFDC9Q8NEX5 89 aa10.21□□□□□ -0.77
VPS35-210ENST00000568784 LINC00526Q96FQ7 95 aa10.21□□□□□ -0.78
VPS35-210ENST00000568784 S100A7L2Q5SY68 101 aa10.21□□□□□ -0.78
VPS35-210ENST00000568784 C3orf22Q8N5N4 141 aa10.21□□□□□ -0.78
VPS35-210ENST00000568784 ANGP03950 147 aaKnown RBP10.2□□□□□ -0.78
VPS35-210ENST00000568784 RPL28P46779 137 aaKnown RBP10.2□□□□□ -0.78
VPS35-210ENST00000568784 OVOL2Q9BRP0 275 aa10.2□□□□□ -0.78
VPS35-210ENST00000568784 ORMDL1Q9P0S3 153 aa10.2□□□□□ -0.78
VPS35-210ENST00000568784 CSDC2Q9Y534 153 aaKnown RBP10.2□□□□□ -0.78
VPS35-210ENST00000568784 H0YGX0 51 aa10.2□□□□□ -0.78
VPS35-210ENST00000568784 FASNP49327 2511 aaKnown RBP10.2□□□□□ -0.78
VPS35-210ENST00000568784 A0A096LNT2 108 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms