RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRAPPC1Q9Y5R8 145 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 MINOS1-NBL1R4GNA1 71 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 S4R3C0 116 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.74□□□□□ -2.13
VPS35-209ENST00000568642 TRAV3A0A0B4J244 114 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 IBA57-AS1B1ANH7 110 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 H3BPC8 53 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 RTL8CO15255 209 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 NDUFB6O95139 128 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 TRACP01848 142 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 NMBP08949 121 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 PEBP1P30086 187 aaKnown RBP1.74□□□□□ -2.13
VPS35-209ENST00000568642 MRPS36P82909 103 aaKnown RBP1.74□□□□□ -2.13
VPS35-209ENST00000568642 INSL4Q14641 139 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 KHDC3LQ587J8 217 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 UNQ5815/PRO19632Q6UWF5 114 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 ZCCHC23Q6ZST2 131 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 HYLS1Q96M11 299 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 LINC00052Q96N35 136 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 SLC50A1Q9BRV3 221 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 MED9Q9NWA0 146 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 SMAD5-AS1Q9Y6J3 95 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 VPS13BQ7Z7G8 4022 aa1.74□□□□□ -2.13
VPS35-209ENST00000568642 A0A087WSZ3 146 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 IGKV3D-11A0A0A0MRZ8 115 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 TRAV14DV4A0A0A6YYC5 116 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 NUPR2A6NF83 97 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 TMEM235A6NFC5 223 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 NUPR1O60356 82 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 IGLV7-43P04211 117 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 TPT1P13693 172 aaKnown RBP1.73□□□□□ -2.13
VPS35-209ENST00000568642 PCBD1P61457 104 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 ESRGQ1W209 222 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 DPY30Q9C005 99 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 SAR1AQ9NR31 198 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 TAS2R4Q9NYW5 299 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 DNAH5Q8TE73 4624 aa1.73□□□□□ -2.13
VPS35-209ENST00000568642 IGHV1-18A0A0C4DH31 117 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 A8MU10 97 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 ODF3BA8MYP8 253 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 H7C2G1 150 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 APOC4-APOC2K7ER74 178 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 HYPMO75409 117 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 APOC2P02655 101 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 COX7CP15954 63 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 FXYD2P54710 66 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 ZNF846Q147U1 533 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 MRGPRG-AS1Q2M3A8 158 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 TMEM136Q6ZRR5 245 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 NDUFA11Q86Y39 141 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 ATP6V0E2Q8NHE4 81 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 VSTM2AQ8TAG5 236 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 LINC00474Q9P2X8 69 aa1.72□□□□□ -2.13
VPS35-209ENST00000568642 NUP214P35658 2090 aaPredicted RBP1.71□□□□□ -2.13
VPS35-209ENST00000568642 CXorf51AA0A1B0GTR3 108 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 PNMA8CA0A1B0GUJ8 204 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 hDV103S1A0JD37 113 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 H3BQ15 152 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 KRTAP5-8O75690 187 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 IGKV3-11P04433 115 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 CIRBPQ14011 172 aaKnown RBP1.71□□□□□ -2.14
VPS35-209ENST00000568642 ZNF79Q15937 498 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 ZNF791Q3KP31 576 aaPredicted RBP1.71□□□□□ -2.14
VPS35-209ENST00000568642 LCE1FQ5T754 118 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 ZNF826PQ6ZT77 177 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 LYPD1Q8N2G4 141 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 TSKUQ8WUA8 353 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 AQP10Q96PS8 301 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 GINS4Q9BRT9 223 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 VAMP8Q9BV40 100 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 TMEM106BQ9NUM4 274 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 LY96Q9Y6Y9 160 aa1.71□□□□□ -2.14
VPS35-209ENST00000568642 MACF1Q9UPN3 7388 aaKnown RBP1.7□□□□□ -2.14
VPS35-209ENST00000568642 K7EP34 96 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 ZNF705BP0CI00 300 aaPredicted RBP1.7□□□□□ -2.14
VPS35-209ENST00000568642 NFYAP23511 347 aaPredicted RBP1.7□□□□□ -2.14
VPS35-209ENST00000568642 NPC2P61916 151 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 ZNF345Q14585 488 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 OR2T2Q6IF00 324 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 SVBPQ8N300 66 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 Q8TAT8 98 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 COX14Q96I36 57 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 AMELYQ99218 206 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 C20orf78Q9BR46 151 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 LINC00467Q9BRT7 94 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 SPANXDQ9BXN6 97 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 Q9H521 79 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 TPRKBQ9Y3C4 175 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 R4GN34 69 aa1.7□□□□□ -2.14
VPS35-209ENST00000568642 IGLV4-69A0A075B6H9 119 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 ZNF736B4DX44 427 aaPredicted RBP1.69□□□□□ -2.14
VPS35-209ENST00000568642 PROSCO94903 275 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 CRPP02741 224 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 SLC25A6P12236 298 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 MIFP14174 115 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 SSR2P43308 183 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 RPL26P61254 145 aaKnown RBP1.69□□□□□ -2.14
VPS35-209ENST00000568642 TPRXLQ17RH7 258 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 DEFB112Q30KQ8 113 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 LINC00483Q53H64 154 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms