RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 LINC00242Q5T6M2 205 aa14.31□□□□□ -0.12
CLN3-234ENST00000568472 FAM19A3Q7Z5A8 133 aa14.31□□□□□ -0.12
CLN3-234ENST00000568472 A0A096LNJ9 63 aa14.3□□□□□ -0.12
CLN3-234ENST00000568472 ATP6V1G1O75348 118 aa14.3□□□□□ -0.12
CLN3-234ENST00000568472 CDK2AP2O75956 126 aa14.3□□□□□ -0.12
CLN3-234ENST00000568472 ATP5LO75964 103 aa14.3□□□□□ -0.12
CLN3-234ENST00000568472 C5orf38Q86SI9 138 aa14.3□□□□□ -0.12
CLN3-234ENST00000568472 KRTAP10-1P60331 282 aa14.29□□□□□ -0.12
CLN3-234ENST00000568472 PDZD11Q5EBL8 140 aa14.29□□□□□ -0.12
CLN3-234ENST00000568472 ZNF561-AS1K7EIQ3 104 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 HSBP1O75506 76 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 PMVKQ15126 192 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 LINC01561Q8N1V8 128 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 C9orf163Q8N9P6 203 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 DNAH5Q8TE73 4624 aa14.28□□□□□ -0.12
CLN3-234ENST00000568472 A0A087WZ39 114 aa14.27□□□□□ -0.13
CLN3-234ENST00000568472 HERVK_113P63121 156 aa14.27□□□□□ -0.13
CLN3-234ENST00000568472 HIGD2BQ4VC39 106 aa14.27□□□□□ -0.13
CLN3-234ENST00000568472 ZC2HC1BQ5TFG8 222 aa14.27□□□□□ -0.13
CLN3-234ENST00000568472 CST9LQ9H4G1 147 aa14.27□□□□□ -0.13
CLN3-234ENST00000568472 PMCHL1Q16048 86 aa14.26□□□□□ -0.13
CLN3-234ENST00000568472 OR10D4PQ8NGN7 298 aa14.26□□□□□ -0.13
CLN3-234ENST00000568472 COX6A2Q02221 97 aa14.25□□□□□ -0.13
CLN3-234ENST00000568472 GEMIN7Q9H840 131 aaKnown RBP14.25□□□□□ -0.13
CLN3-234ENST00000568472 LRP1BQ9NZR2 4599 aa14.25□□□□□ -0.13
CLN3-234ENST00000568472 IGHV3-64A0A075B6Q5 118 aa14.24□□□□□ -0.13
CLN3-234ENST00000568472 TINCRA0A1B0GVN0 87 aa14.23□□□□□ -0.13
CLN3-234ENST00000568472 F8WDY8 70 aa14.23□□□□□ -0.13
CLN3-234ENST00000568472 SLPIP03973 132 aa14.23□□□□□ -0.13
CLN3-234ENST00000568472 SERF1AO75920 110 aa14.22□□□□□ -0.13
CLN3-234ENST00000568472 C2orf48Q96LS8 159 aa14.22□□□□□ -0.13
CLN3-234ENST00000568472 A0A0J9YXV3 536 aa14.21□□□□□ -0.13
CLN3-234ENST00000568472 PKIGQ9Y2B9 76 aa14.21□□□□□ -0.13
CLN3-234ENST00000568472 LINC01620Q4KN68 170 aa14.2□□□□□ -0.14
CLN3-234ENST00000568472 Q6ZSA8 131 aa14.2□□□□□ -0.14
CLN3-234ENST00000568472 ORAOV1Q8WV07 137 aa14.2□□□□□ -0.14
CLN3-234ENST00000568472 IGLV4-69A0A075B6H9 119 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BKO60814 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BJP06899 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BOP23527 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BBP33778 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 NDUFA6P56556 154 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BDP58876 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BCP62807 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 SPAG11BQ08648 103 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 SYCNQ0VAF6 134 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST2H2BEQ16778 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BHQ93079 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BNQ99877 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 HIST1H2BMQ99879 126 aa14.19□□□□□ -0.14
CLN3-234ENST00000568472 SDIM1Q6ZPB5 146 aa14.18□□□□□ -0.14
CLN3-234ENST00000568472 FAM19A2Q8N3H0 131 aa14.18□□□□□ -0.14
CLN3-234ENST00000568472 IFI27L1Q96BM0 104 aa14.18□□□□□ -0.14
CLN3-234ENST00000568472 IGLV5-45A0A087WSX0 123 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 LINC00310P59036 64 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 LINC00469Q8N7U9 141 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 CARD19Q96LW7 228 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 PACRGQ96M98 296 aaPredicted RBP14.17□□□□□ -0.14
CLN3-234ENST00000568472 CAMK2N2Q96S95 79 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 CDKN2A-AS1Q9UH64 79 aa14.17□□□□□ -0.14
CLN3-234ENST00000568472 LINC00526Q96FQ7 95 aa14.16□□□□□ -0.14
CLN3-234ENST00000568472 TRAV12-1A0A0B4J245 112 aa14.15□□□□□ -0.14
CLN3-234ENST00000568472 LEPROTL1O95214 131 aa14.15□□□□□ -0.14
CLN3-234ENST00000568472 XGP55808 180 aa14.15□□□□□ -0.14
CLN3-234ENST00000568472 HSPB8Q9UJY1 196 aa14.15□□□□□ -0.14
CLN3-234ENST00000568472 KIAA1109Q2LD37 5005 aa14.15□□□□□ -0.14
CLN3-234ENST00000568472 H3BRM9 83 aa14.14□□□□□ -0.15
CLN3-234ENST00000568472 IGLC3P0DOY3 106 aa14.14□□□□□ -0.15
CLN3-234ENST00000568472 FAM30AQ9NZY2 134 aa14.14□□□□□ -0.15
CLN3-234ENST00000568472 RNF151Q2KHN1 245 aa14.13□□□□□ -0.15
CLN3-234ENST00000568472 NDUFA1O15239 70 aa14.12□□□□□ -0.15
CLN3-234ENST00000568472 NUPR1O60356 82 aa14.12□□□□□ -0.15
CLN3-234ENST00000568472 PRSS2P07478 247 aa14.12□□□□□ -0.15
CLN3-234ENST00000568472 KIAA0087Q14695 138 aa14.12□□□□□ -0.15
CLN3-234ENST00000568472 Q6ZRU5 148 aa14.11□□□□□ -0.15
CLN3-234ENST00000568472 Q8IZM0 81 aa14.11□□□□□ -0.15
CLN3-234ENST00000568472 CHAC1Q9BUX1 264 aa14.11□□□□□ -0.15
CLN3-234ENST00000568472 MRPL35Q9NZE8 188 aaKnown RBP14.11□□□□□ -0.15
CLN3-234ENST00000568472 CHTOPQ9Y3Y2 248 aaKnown RBP14.11□□□□□ -0.15
CLN3-234ENST00000568472 C6orf226Q5I0X4 101 aa14.1□□□□□ -0.15
CLN3-234ENST00000568472 RYR1P21817 5038 aa14.1□□□□□ -0.15
CLN3-234ENST00000568472 COA6Q5JTJ3 125 aaKnown RBP14.09□□□□□ -0.15
CLN3-234ENST00000568472 LINC00474Q9P2X8 69 aa14.09□□□□□ -0.15
CLN3-234ENST00000568472 SMIM1B2RUZ4 78 aa14.08□□□□□ -0.16
CLN3-234ENST00000568472 APOBP04114 4563 aaKnown RBP14.08□□□□□ -0.16
CLN3-234ENST00000568472 LOC107984640A0A0U1RRK4 108 aa14.07□□□□□ -0.16
CLN3-234ENST00000568472 CKS1BP61024 79 aa14.07□□□□□ -0.16
CLN3-234ENST00000568472 CIRBPQ14011 172 aaKnown RBP14.07□□□□□ -0.16
CLN3-234ENST00000568472 TOMM7Q9P0U1 55 aa14.07□□□□□ -0.16
CLN3-234ENST00000568472 F8VRH5 84 aa14.06□□□□□ -0.16
CLN3-234ENST00000568472 FABP4P15090 132 aa14.06□□□□□ -0.16
CLN3-234ENST00000568472 CXCL5P42830 114 aa14.06□□□□□ -0.16
CLN3-234ENST00000568472 DNAH8Q96JB1 4490 aa14.05□□□□□ -0.16
CLN3-234ENST00000568472 TRBV30A0A0K0K1B3 111 aa14.05□□□□□ -0.16
CLN3-234ENST00000568472 ZNF22P17026 224 aaPredicted RBP14.05□□□□□ -0.16
CLN3-234ENST00000568472 UNQ6190/PRO20217Q6UXQ8 127 aa14.05□□□□□ -0.16
CLN3-234ENST00000568472 DPH3Q96FX2 82 aa14.05□□□□□ -0.16
CLN3-234ENST00000568472 C11orf86A6NJI1 115 aa14.04□□□□□ -0.16
CLN3-234ENST00000568472 SCXQ7RTU7 201 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms