RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	LINC00242	Q5T6M2	205 aa		11.8	□□□□□ -0.52
COMMD4-222	ENST00000568034	SPATA12	Q7Z6I5	190 aa		11.8	□□□□□ -0.52
COMMD4-222	ENST00000568034	C15orf56	Q8N910	161 aa		11.8	□□□□□ -0.52
COMMD4-222	ENST00000568034	C2orf88	Q9BSF0	95 aa		11.8	□□□□□ -0.52
COMMD4-222	ENST00000568034	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.79	□□□□□ -0.52
COMMD4-222	ENST00000568034	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.79	□□□□□ -0.52
COMMD4-222	ENST00000568034	EREG	O14944	169 aa		11.79	□□□□□ -0.52
COMMD4-222	ENST00000568034	FAM19A3	Q7Z5A8	133 aa		11.79	□□□□□ -0.52
COMMD4-222	ENST00000568034	COX6A2	Q02221	97 aa		11.78	□□□□□ -0.52
COMMD4-222	ENST00000568034	COA6	Q5JTJ3	125 aa	Known RBP	11.78	□□□□□ -0.52
COMMD4-222	ENST00000568034	ATP5L	O75964	103 aa		11.77	□□□□□ -0.53
COMMD4-222	ENST00000568034	CST9L	Q9H4G1	147 aa		11.77	□□□□□ -0.53
COMMD4-222	ENST00000568034	PRSS1	P07477	247 aa		11.76	□□□□□ -0.53
COMMD4-222	ENST00000568034	PMVK	Q15126	192 aa		11.76	□□□□□ -0.53
COMMD4-222	ENST00000568034	C5orf38	Q86SI9	138 aa		11.76	□□□□□ -0.53
COMMD4-222	ENST00000568034	COX7A2L	O14548	114 aa		11.75	□□□□□ -0.53
COMMD4-222	ENST00000568034	C14orf177	Q52M58	125 aa		11.75	□□□□□ -0.53
COMMD4-222	ENST00000568034	NTN5	Q8WTR8	489 aa	Predicted RBP	11.75	□□□□□ -0.53
COMMD4-222	ENST00000568034	APOB	P04114	4563 aa	Known RBP	11.75	□□□□□ -0.53
COMMD4-222	ENST00000568034	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.74	□□□□□ -0.53
COMMD4-222	ENST00000568034	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.74	□□□□□ -0.53
COMMD4-222	ENST00000568034		A0A0J9YXV3	536 aa		11.74	□□□□□ -0.53
COMMD4-222	ENST00000568034	IFI27L1	Q96BM0	104 aa		11.74	□□□□□ -0.53
COMMD4-222	ENST00000568034	IGHV1-58	A0A0C4DH39	117 aa		11.73	□□□□□ -0.53
COMMD4-222	ENST00000568034	PGPEP1	Q9NXJ5	209 aa		11.73	□□□□□ -0.53
COMMD4-222	ENST00000568034		A0A087WZ39	114 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	LEPROTL1	O95214	131 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	NDUFA6	P56556	154 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	HIGD2B	Q4VC39	106 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	CDPF1	Q6NVV7	123 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	CFAP161	Q6P656	301 aa		11.72	□□□□□ -0.53
COMMD4-222	ENST00000568034	IGLV4-69	A0A075B6H9	119 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	TINCR	A0A1B0GVN0	87 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	hDV102S1	A0JD36	115 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	SLPI	P03973	132 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	S100A6	P06703	90 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	HERVK_113	P63121	156 aa		11.71	□□□□□ -0.53
COMMD4-222	ENST00000568034	IGLV5-45	A0A087WSX0	123 aa		11.7	□□□□□ -0.54
COMMD4-222	ENST00000568034	IGLV5-52	A0A0A0MRZ9	124 aa		11.7	□□□□□ -0.54
COMMD4-222	ENST00000568034	IGLC3	P0DOY3	106 aa		11.7	□□□□□ -0.54
COMMD4-222	ENST00000568034	SEC11A	P67812	179 aa		11.7	□□□□□ -0.54
COMMD4-222	ENST00000568034	IGHV3-64	A0A075B6Q5	118 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	TRAV12-1	A0A0B4J245	112 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	C16orf90	A8MZG2	172 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	FABP4	P15090	132 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	MAL	P21145	153 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	LINC01561	Q8N1V8	128 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	CDKN2A-AS1	Q9UH64	79 aa		11.69	□□□□□ -0.54
COMMD4-222	ENST00000568034	LOC105371267	A0A1B0GV96	52 aa		11.68	□□□□□ -0.54
COMMD4-222	ENST00000568034	CNBP	P62633	177 aa	Known RBP	11.68	□□□□□ -0.54
COMMD4-222	ENST00000568034	LINC00526	Q96FQ7	95 aa		11.68	□□□□□ -0.54
COMMD4-222	ENST00000568034	GEMIN7	Q9H840	131 aa	Known RBP	11.68	□□□□□ -0.54
COMMD4-222	ENST00000568034	HSPB8	Q9UJY1	196 aa		11.68	□□□□□ -0.54
COMMD4-222	ENST00000568034	PACRG	Q96M98	296 aa	Predicted RBP	11.67	□□□□□ -0.54
COMMD4-222	ENST00000568034	APOM	O95445	188 aa		11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	LINC00469	Q8N7U9	141 aa		11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	ORAOV1	Q8WV07	137 aa		11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	CHAC1	Q9BUX1	264 aa		11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	KIAA1109	Q2LD37	5005 aa		11.66	□□□□□ -0.54
COMMD4-222	ENST00000568034	C11orf86	A6NJI1	115 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	ZNF22	P17026	224 aa	Predicted RBP	11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	KRTAP10-1	P60331	282 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	SPAG11B	Q08648	103 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	ODF1	Q14990	250 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	LINC01620	Q4KN68	170 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	OR10D4P	Q8NGN7	298 aa		11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	MRPL35	Q9NZE8	188 aa	Known RBP	11.65	□□□□□ -0.54
COMMD4-222	ENST00000568034	SMIM1	B2RUZ4	78 aa		11.64	□□□□□ -0.55
COMMD4-222	ENST00000568034	GCSH	P23434	173 aa		11.64	□□□□□ -0.55
COMMD4-222	ENST00000568034	KIAA0087	Q14695	138 aa		11.64	□□□□□ -0.55
COMMD4-222	ENST00000568034	RYR1	P21817	5038 aa		11.64	□□□□□ -0.55
COMMD4-222	ENST00000568034		F8VRH5	84 aa		11.63	□□□□□ -0.55
COMMD4-222	ENST00000568034	ZNF561-AS1	K7EIQ3	104 aa		11.63	□□□□□ -0.55
COMMD4-222	ENST00000568034	C9orf163	Q8N9P6	203 aa		11.63	□□□□□ -0.55
COMMD4-222	ENST00000568034		H0Y8G0	127 aa		11.62	□□□□□ -0.55
COMMD4-222	ENST00000568034	HSPG2	P98160	4391 aa		11.61	□□□□□ -0.55
COMMD4-222	ENST00000568034	HIST3H2BB	Q8N257	126 aa		11.61	□□□□□ -0.55
COMMD4-222	ENST00000568034	C2orf48	Q96LS8	159 aa		11.61	□□□□□ -0.55
COMMD4-222	ENST00000568034	SPINK8	P0C7L1	97 aa		11.6	□□□□□ -0.55
COMMD4-222	ENST00000568034		Q6ZRU5	148 aa		11.6	□□□□□ -0.55
COMMD4-222	ENST00000568034	MAP1LC3C	Q9BXW4	147 aa		11.6	□□□□□ -0.55
COMMD4-222	ENST00000568034	SYS1-DBNDD2	H3BUS1	97 aa		11.59	□□□□□ -0.55
COMMD4-222	ENST00000568034	SYCN	Q0VAF6	134 aa		11.59	□□□□□ -0.55
COMMD4-222	ENST00000568034	CARD19	Q96LW7	228 aa		11.59	□□□□□ -0.55
COMMD4-222	ENST00000568034	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034	IGLV5-39	A0A0G2JS06	123 aa		11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034		H3BRM9	83 aa		11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034		Q8IZM0	81 aa		11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034	CAMK2N2	Q96S95	79 aa		11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034	PMCHL2	Q9BQD1	86 aa		11.58	□□□□□ -0.56
COMMD4-222	ENST00000568034	C3orf79	P0CE67	100 aa		11.57	□□□□□ -0.56
COMMD4-222	ENST00000568034	C10orf25	Q5T742	122 aa		11.57	□□□□□ -0.56
COMMD4-222	ENST00000568034	SDIM1	Q6ZPB5	146 aa		11.57	□□□□□ -0.56
COMMD4-222	ENST00000568034		Q6ZSA8	131 aa		11.57	□□□□□ -0.56
COMMD4-222	ENST00000568034		F8WDY8	70 aa		11.56	□□□□□ -0.56
COMMD4-222	ENST00000568034	SNRPE	P62304	92 aa	Known RBP	11.56	□□□□□ -0.56
COMMD4-222	ENST00000568034	TMEM170B	Q5T4T1	132 aa		11.56	□□□□□ -0.56
COMMD4-222	ENST00000568034	HIST1H2BL	Q99880	126 aa		11.56	□□□□□ -0.56
COMMD4-222	ENST00000568034	FAM30A	Q9NZY2	134 aa		11.56	□□□□□ -0.56

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