RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 hDV102S1A0JD36 115 aa7.99□□□□□ -1.13
SF3B3-208ENST00000567250 AMELXQ99217 191 aa7.99□□□□□ -1.13
SF3B3-208ENST00000567250 ATP5LO75964 103 aa7.98□□□□□ -1.13
SF3B3-208ENST00000567250 UBE2D1P51668 147 aa7.98□□□□□ -1.13
SF3B3-208ENST00000567250 LINC00173Q6ZV60 143 aa7.98□□□□□ -1.13
SF3B3-208ENST00000567250 C15orf56Q8N910 161 aa7.98□□□□□ -1.13
SF3B3-208ENST00000567250 PKHD1P08F94 4074 aa7.98□□□□□ -1.13
SF3B3-208ENST00000567250 A0A096LNJ9 63 aa7.97□□□□□ -1.13
SF3B3-208ENST00000567250 GVQW2A0A096LPI5 108 aaPredicted RBP7.97□□□□□ -1.13
SF3B3-208ENST00000567250 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.97□□□□□ -1.13
SF3B3-208ENST00000567250 PRSS1P07477 247 aa7.97□□□□□ -1.13
SF3B3-208ENST00000567250 GCSHP23434 173 aa7.97□□□□□ -1.13
SF3B3-208ENST00000567250 PMCHL1Q16048 86 aa7.97□□□□□ -1.13
SF3B3-208ENST00000567250 EPPK1P58107 5090 aaKnown RBP7.97□□□□□ -1.13
SF3B3-208ENST00000567250 FAM229AH3BQW9 127 aa7.96□□□□□ -1.14
SF3B3-208ENST00000567250 HERVK_113P63121 156 aa7.96□□□□□ -1.14
SF3B3-208ENST00000567250 PMVKQ15126 192 aa7.96□□□□□ -1.14
SF3B3-208ENST00000567250 LINC00242Q5T6M2 205 aa7.96□□□□□ -1.14
SF3B3-208ENST00000567250 FAM19A3Q7Z5A8 133 aa7.96□□□□□ -1.14
SF3B3-208ENST00000567250 IGHV3OR16-9A0A0B4J2B5 98 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 ZNF561-AS1K7EIQ3 104 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 SERF1AO75920 110 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 CNBPP62633 177 aaKnown RBP7.95□□□□□ -1.14
SF3B3-208ENST00000567250 HIGD2BQ4VC39 106 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 PDZD11Q5EBL8 140 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 C5orf38Q86SI9 138 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 OR10D4PQ8NGN7 298 aa7.95□□□□□ -1.14
SF3B3-208ENST00000567250 GEMIN7Q9H840 131 aaKnown RBP7.95□□□□□ -1.14
SF3B3-208ENST00000567250 FUSP35637 526 aaKnown RBP eCLIP7.94□□□□□ -1.14
SF3B3-208ENST00000567250 PKIGQ9Y2B9 76 aa7.94□□□□□ -1.14
SF3B3-208ENST00000567250 DNAH11Q96DT5 4516 aa7.94□□□□□ -1.14
SF3B3-208ENST00000567250 A0A087WZ39 114 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BKO60814 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BJP06899 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BOP23527 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BBP33778 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 NDUFA6P56556 154 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BDP58876 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BCP62807 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST2H2BEQ16778 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.93□□□□□ -1.14
SF3B3-208ENST00000567250 ZC2HC1BQ5TFG8 222 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 LINC01561Q8N1V8 128 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BHQ93079 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 PACRGQ96M98 296 aaPredicted RBP7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BNQ99877 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 HIST1H2BMQ99879 126 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 CST9LQ9H4G1 147 aa7.93□□□□□ -1.14
SF3B3-208ENST00000567250 TINCRA0A1B0GVN0 87 aa7.92□□□□□ -1.14
SF3B3-208ENST00000567250 SPAG11BQ08648 103 aa7.92□□□□□ -1.14
SF3B3-208ENST00000567250 ORAOV1Q8WV07 137 aa7.92□□□□□ -1.14
SF3B3-208ENST00000567250 IGHV3-64A0A075B6Q5 118 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 A0A0J9YXV3 536 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 F8WDY8 70 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 CDK2AP2O75956 126 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 LEPROTL1O95214 131 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 LINC00310P59036 64 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 FAM19A2Q8N3H0 131 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 LINC00469Q8N7U9 141 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 C9orf163Q8N9P6 203 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 IFI27L1Q96BM0 104 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 C2orf48Q96LS8 159 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 CARD19Q96LW7 228 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 HSPB8Q9UJY1 196 aa7.91□□□□□ -1.14
SF3B3-208ENST00000567250 IGLV4-69A0A075B6H9 119 aa7.9□□□□□ -1.14
SF3B3-208ENST00000567250 KRTAP10-1P60331 282 aa7.9□□□□□ -1.14
SF3B3-208ENST00000567250 COX6A2Q02221 97 aa7.9□□□□□ -1.14
SF3B3-208ENST00000567250 CAMK2N2Q96S95 79 aa7.9□□□□□ -1.14
SF3B3-208ENST00000567250 CHAC1Q9BUX1 264 aa7.9□□□□□ -1.14
SF3B3-208ENST00000567250 IGLV5-45A0A087WSX0 123 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 TRAV12-1A0A0B4J245 112 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 H3BRM9 83 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 PRSS2P07478 247 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 IGLC3P0DOY3 106 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 SYCNQ0VAF6 134 aa7.89□□□□□ -1.15
SF3B3-208ENST00000567250 BIRC6Q9NR09 4857 aa7.88□□□□□ -1.15
SF3B3-208ENST00000567250 NDUFA1O15239 70 aa7.88□□□□□ -1.15
SF3B3-208ENST00000567250 CDKN2A-AS1Q9UH64 79 aa7.88□□□□□ -1.15
SF3B3-208ENST00000567250 LINC01620Q4KN68 170 aa7.87□□□□□ -1.15
SF3B3-208ENST00000567250 LINC00526Q96FQ7 95 aa7.87□□□□□ -1.15
SF3B3-208ENST00000567250 CHTOPQ9Y3Y2 248 aaKnown RBP7.87□□□□□ -1.15
SF3B3-208ENST00000567250 F8VRH5 84 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 SLPIP03973 132 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 CXCL5P42830 114 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 COA6Q5JTJ3 125 aaKnown RBP7.86□□□□□ -1.15
SF3B3-208ENST00000567250 Q6ZSA8 131 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 Q8IZM0 81 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 TOMM7Q9P0U1 55 aa7.86□□□□□ -1.15
SF3B3-208ENST00000567250 DNAH5Q8TE73 4624 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 SMIM1B2RUZ4 78 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 H0Y8G0 127 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 NUPR1O60356 82 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 FABP4P15090 132 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 CKS1BP61024 79 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 Q6ZRU5 148 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 MAP1LC3CQ9BXW4 147 aa7.85□□□□□ -1.15
SF3B3-208ENST00000567250 MRPL35Q9NZE8 188 aaKnown RBP7.85□□□□□ -1.15
SF3B3-208ENST00000567250 DYNC1H1Q14204 4646 aaKnown RBP7.85□□□□□ -1.15
SF3B3-208ENST00000567250 C11orf86A6NJI1 115 aa7.84□□□□□ -1.15
SF3B3-208ENST00000567250 ZNF22P17026 224 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms