RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CIRBPQ14011 172 aaKnown RBP8.58□□□□□ -1.04
CLK3-216ENST00000564468 KIAA1644Q3SXP7 199 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 Q6ZN92 141 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 C5orf38Q86SI9 138 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 SVBPQ8N300 66 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 CARD19Q96LW7 228 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 OPRPNQ99935 248 aaPredicted RBP8.58□□□□□ -1.04
CLK3-216ENST00000564468 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.58□□□□□ -1.04
CLK3-216ENST00000564468 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
CLK3-216ENST00000564468 IGLV4-3A0A075B6K6 122 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 LINC01549A6NIU2 74 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 COX6A2Q02221 97 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 SYCNQ0VAF6 134 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 PAPPA-AS1Q5QFB9 102 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 TEX43Q6ZNM6 134 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 PRSS3P2Q8NHM4 247 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 FAM104AQ969W3 186 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 C2orf88Q9BSF0 95 aa8.57□□□□□ -1.04
CLK3-216ENST00000564468 TGIF2-C20orf24A0A0A6YYL0 155 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 FABP9Q0Z7S8 132 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 OR10D4PQ8NGN7 298 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 C2orf48Q96LS8 159 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 VCX2Q9H322 139 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 LINC00474Q9P2X8 69 aa8.56□□□□□ -1.04
CLK3-216ENST00000564468 IGLV4-69A0A075B6H9 119 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 IGHV3OR16-9A0A0B4J2B5 98 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 F8WDY8 70 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 SPACA4Q8TDM5 124 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 LINC00526Q96FQ7 95 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 CAMK2N2Q96S95 79 aa8.55□□□□□ -1.04
CLK3-216ENST00000564468 ALKBH7Q9BT30 221 aaPredicted RBP8.55□□□□□ -1.04
CLK3-216ENST00000564468 MRPL18Q9H0U6 180 aaKnown RBP8.55□□□□□ -1.04
CLK3-216ENST00000564468 PANO1I0J062 215 aa8.54□□□□□ -1.04
CLK3-216ENST00000564468 A0A087WYN8 130 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 IGIPA6NJ69 53 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 CHTF8P0CG12 524 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 ORAOV1Q8WV07 137 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 TOMM6Q96B49 74 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 AMELXQ99217 191 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 TIMM17AQ99595 171 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 SMCO4Q9NRQ5 59 aa8.53□□□□□ -1.04
CLK3-216ENST00000564468 A0A087WZ39 114 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 IGKV2-24A0A0C4DH68 120 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 UBE2D1P51668 147 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 RPL37AP61513 92 aaKnown RBP8.52□□□□□ -1.05
CLK3-216ENST00000564468 SEC11AP67812 179 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 MAJINQ3KP22 176 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 LINC00242Q5T6M2 205 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 FA2HQ7L5A8 372 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 LINC01561Q8N1V8 128 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 PLAC8Q9NZF1 115 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 TRAPPC1Q9Y5R8 145 aa8.52□□□□□ -1.05
CLK3-216ENST00000564468 LOC107984640A0A0U1RRK4 108 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 LINC01546A6NGU7 62 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 RNF151Q2KHN1 245 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 SERTAD4-AS1Q5TG53 156 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 Q6ZRU5 148 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 ERASQ7Z444 233 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 SCGB3A1Q96QR1 104 aa8.51□□□□□ -1.05
CLK3-216ENST00000564468 A0A096LNI7 61 aa8.5□□□□□ -1.05
CLK3-216ENST00000564468 STPG4Q8N801 248 aa8.5□□□□□ -1.05
CLK3-216ENST00000564468 C7orf33Q8WU49 177 aa8.5□□□□□ -1.05
CLK3-216ENST00000564468 NDUFA1O15239 70 aa8.49□□□□□ -1.05
CLK3-216ENST00000564468 HERVK_113P63121 156 aa8.49□□□□□ -1.05
CLK3-216ENST00000564468 LINC00173Q6ZV60 143 aa8.49□□□□□ -1.05
CLK3-216ENST00000564468 FAM19A3Q7Z5A8 133 aa8.49□□□□□ -1.05
CLK3-216ENST00000564468 MRPL35Q9NZE8 188 aaKnown RBP8.49□□□□□ -1.05
CLK3-216ENST00000564468 UBR4Q5T4S7 5183 aa8.48□□□□□ -1.05
CLK3-216ENST00000564468 PTTG1IPP53801 180 aa8.47□□□□□ -1.05
CLK3-216ENST00000564468 KRTAP10-4P60372 401 aaPredicted RBP8.47□□□□□ -1.05
CLK3-216ENST00000564468 GAGE2BQ13066 116 aa8.47□□□□□ -1.05
CLK3-216ENST00000564468 ZC2HC1BQ5TFG8 222 aa8.47□□□□□ -1.05
CLK3-216ENST00000564468 GEMIN7Q9H840 131 aaKnown RBP8.47□□□□□ -1.05
CLK3-216ENST00000564468 KRTAP29-1A8MX34 341 aaPredicted RBP8.46□□□□□ -1.06
CLK3-216ENST00000564468 PRSS2P07478 247 aa8.46□□□□□ -1.06
CLK3-216ENST00000564468 RAB5BP61020 215 aa8.46□□□□□ -1.06
CLK3-216ENST00000564468 PACRGQ96M98 296 aaPredicted RBP8.46□□□□□ -1.06
CLK3-216ENST00000564468 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.45□□□□□ -1.06
CLK3-216ENST00000564468 LINC00614P0C842 121 aa8.45□□□□□ -1.06
CLK3-216ENST00000564468 RPL18AQ02543 176 aaKnown RBP8.45□□□□□ -1.06
CLK3-216ENST00000564468 C18orf32Q8TCD1 76 aa8.45□□□□□ -1.06
CLK3-216ENST00000564468 TRBV30A0A0K0K1B3 111 aa8.44□□□□□ -1.06
CLK3-216ENST00000564468 KIAA0087Q14695 138 aa8.44□□□□□ -1.06
CLK3-216ENST00000564468 UNQ6190/PRO20217Q6UXQ8 127 aa8.44□□□□□ -1.06
CLK3-216ENST00000564468 TINCRA0A1B0GVN0 87 aa8.43□□□□□ -1.06
CLK3-216ENST00000564468 TLX1NBP0CAT3 122 aa8.43□□□□□ -1.06
CLK3-216ENST00000564468 PMVKQ15126 192 aa8.43□□□□□ -1.06
CLK3-216ENST00000564468 C6orf226Q5I0X4 101 aa8.43□□□□□ -1.06
CLK3-216ENST00000564468 A0A0J9YXV3 536 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 HBDP02042 147 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 CKS1BP61024 79 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 Q8IZM0 81 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 YPEL4Q96NS1 127 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 CST9LQ9H4G1 147 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 TOMM7Q9P0U1 55 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 CDKN2A-AS1Q9UH64 79 aa8.42□□□□□ -1.06
CLK3-216ENST00000564468 C10orf25Q5T742 122 aa8.41□□□□□ -1.06
CLK3-216ENST00000564468 LINC00469Q8N7U9 141 aa8.41□□□□□ -1.06
CLK3-216ENST00000564468 C6orf48Q9UBA6 75 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms