RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 RPRMQ9NS64 109 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 TRAPPC1Q9Y5R8 145 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 CSMD2Q7Z408 3487 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 C7orf71A4D174 169 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 C2orf70A6NJV1 201 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 ZNF861PO60384 105 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 PRH1P02810 166 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 IGLC1P0CG04 106 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 PDE6HQ13956 83 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 SPINK9Q5DT21 86 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 SPANXA2-OT1Q8N9U9 137 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 CMTM2Q8TAZ6 248 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 SMCR5Q8TEV8 140 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 IMMP2LQ96T52 175 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 TXNDC17Q9BRA2 123 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 SNHG12Q9BXW3 62 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 TMEM167BQ9NRX6 74 aa3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 NSD1Q96L73 2696 aaPredicted RBP3.33□□□□□ -1.88
VPS35P1-201ENST00000563400 IGHV3-73A0A0B4J1V6 119 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 FAM24AA6NFZ4 105 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 E7EUB6 86 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 PHOX2AO14813 284 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 NPYP01303 97 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 IGLV1-51P01701 117 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 HLA-DRB4P13762 266 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 RPL28P46779 137 aaKnown RBP3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 MIAQ16674 131 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 DEFB114Q30KQ6 69 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 GFI1BQ5VTD9 330 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 Q5W150 140 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 PATE2Q6UY27 113 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 HLA-DRB4X5D2U9 266 aa3.32□□□□□ -1.88
VPS35P1-201ENST00000563400 NIPBLQ6KC79 2804 aaeCLIP3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 UBE2L5PA0A1B0GUS4 154 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 TRGC1P0CF51 173 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 GTF2H5Q6ZYL4 71 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 MUC7Q8TAX7 377 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 DPH3Q96FX2 82 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 NF1P21359 2839 aa3.31□□□□□ -1.88
VPS35P1-201ENST00000563400 UQCRQO14949 82 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 SIX6O95475 246 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 HSD52Q0P140 79 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 MRGPRG-AS1Q2M3A8 158 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 DEFB136Q30KP8 78 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 TEN1Q86WV5 123 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 DIRC1Q969H9 104 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 MIEN1Q9BRT3 115 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 SMDT1Q9H4I9 107 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 TMEM14CQ9P0S9 112 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 FBN3Q75N90 2809 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 CSMD1Q96PZ7 3565 aa3.3□□□□□ -1.88
VPS35P1-201ENST00000563400 GRIFINA4D1Z8 144 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 H3BQ85 93 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 PANO1I0J062 215 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 IGKV1-17P01599 117 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 NMBP08949 121 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 XCL1P47992 114 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 CLLU1Q5K131 121 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 KCNRGQ8N5I3 272 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 LENEPQ9Y5L5 61 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 ARL2-SNX15V9GYD0 113 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 ATRQ13535 2644 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 TNCP24821 2201 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 CTXND1A0A1B0GTU2 59 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 HBDP02042 147 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 ZNF90Q03938 601 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 KPRPQ5T749 579 aaPredicted RBP3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 C10orf99Q6UWK7 81 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 FOXI2Q6ZQN5 318 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 LINC00052Q96N35 136 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 S4R3C0 116 aa3.29□□□□□ -1.88
VPS35P1-201ENST00000563400 RBAKDNA6NC62 111 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 PYYP10082 97 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 CRYGAP11844 174 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 ZNF22P17026 224 aaPredicted RBP3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 UBE2L3P68036 154 aaKnown RBP3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 Q8NDZ9 215 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 MANBALQ9NQG1 85 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 MDFICQ9P1T7 246 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 CELSR1Q9NYQ6 3014 aa3.28□□□□□ -1.88
VPS35P1-201ENST00000563400 ZANQ9Y493 2812 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 IGKV3-7A0A075B6H7 116 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 H3BRN7 92 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 DNAH10OSP0CZ25 163 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 GZMBP10144 247 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 MT3P25713 68 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 DEFB131AP59861 70 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 KRTAP10-3P60369 221 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 TMEM258P61165 79 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 UBE2G1P62253 170 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 PSMG4Q5JS54 123 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 COL5A1-AS1Q5SY13 56 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 MIC13Q5XKP0 118 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 C9orf62Q8N4C0 152 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 LINC00612Q8N6U2 182 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 C5orf17Q8NAS9 161 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 OR4B1Q8NGF8 309 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 CYYR1Q96J86 154 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 ODF3Q96PU9 254 aa3.27□□□□□ -1.89
VPS35P1-201ENST00000563400 MGST2Q99735 147 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms