RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 POLEQ07864 2286 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 PDE4DIPQ5VU43 2346 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 MYOFQ9NZM1 2061 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1OR2-108A0A075B7D4 117 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-66A0A0C4DH42 116 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 IGHV7-4-1A0A0J9YVY3 117 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 H7C2G1 150 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 NDUFA1O15239 70 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 PSCAO43653 123 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 IGLV3-19P01714 112 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 MSMBP08118 114 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 CHTF8P0CG12 524 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-30-3P0DP02 117 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 DEFB134Q4QY38 66 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 ENHOQ6UWT2 76 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 FAM104AQ969W3 186 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 RETNLBQ9BQ08 111 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 NDUFA4L2Q9NRX3 87 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 CCL26Q9Y258 94 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 C22orf24Q9Y442 160 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 RANBP2P49792 3224 aaKnown RBP2.23□□□□□ -2.05
VPS35-203ENST00000562420 CDH23Q9H251 3354 aa2.23□□□□□ -2.05
VPS35-203ENST00000562420 DYSFO75923 2080 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 A0A087WVE0 104 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-49A0A0A0MS15 119 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-43A0A0B4J1X8 118 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 CHKB-CPT1BH3BT56 60 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 BPY2O14599 106 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 RTL8CO15255 209 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 POLR2KP53803 58 aaKnown RBP2.22□□□□□ -2.05
VPS35-203ENST00000562420 NREPQ16612 68 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 Q5VV11 94 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 SOSTDC1Q6X4U4 206 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 CASC2Q6XLA1 102 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 TMEM167AQ8TBQ9 72 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 LINC00574Q9H8X3 128 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 TRANK1O15050 2925 aa2.22□□□□□ -2.05
VPS35-203ENST00000562420 NACAE9PAV3 2078 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 MPDZO75970 2070 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 CACNA1CQ13936 2221 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 LAMA2P24043 3122 aaKnown RBP2.21□□□□□ -2.06
VPS35-203ENST00000562420 IGKV1D-37A0A075B6S9 117 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 CEP290O15078 2479 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 IGKV3-11P04433 115 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 TSPEAR-AS2P59090 65 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 C1orf64Q8NEQ6 169 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 LINC00308Q8TCZ7 52 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 C16orf74Q96GX8 76 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 SNURFQ9Y675 71 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 CHD7Q9P2D1 2997 aa2.21□□□□□ -2.06
VPS35-203ENST00000562420 SPTBP11277 2137 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 F5P12259 2224 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 IGLV11-55A0A075B6I3 123 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 H3BRN7 92 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 CRPP02741 224 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 IGHV1-8P0DP01 117 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 CNBPP62633 177 aaKnown RBP2.2□□□□□ -2.06
VPS35-203ENST00000562420 BSPH1Q075Z2 132 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 FAM229BQ4G0N7 80 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 MUC7Q8TAX7 377 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 ZNF625Q96I27 306 aaPredicted RBP2.2□□□□□ -2.06
VPS35-203ENST00000562420 RNF5Q99942 180 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 PRO3102Q9H379 93 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 C14orf132Q9NPU4 83 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 PCNX2A6NKB5 2137 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 CHD9Q3L8U1 2897 aa2.2□□□□□ -2.06
VPS35-203ENST00000562420 C2orf16Q68DN1 1984 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 PRRC2BQ5JSZ5 2229 aaKnown RBP2.19□□□□□ -2.06
VPS35-203ENST00000562420 CEP192Q8TEP8 1941 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 MUC22E2RYF6 1773 aaPredicted RBP2.19□□□□□ -2.06
VPS35-203ENST00000562420 TRAV21A0A0B4J279 112 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 SPTY2D1-AS1A0A0U1RR47 76 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 PINLYPA6NC86 204 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 A6NED7 52 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 C10orf142B7Z368 130 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 H0YGG7 62 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 IGKV1-16P04430 117 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 EGFEM1PQ0D2K5 195 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 Q6ZS52 159 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 SPTSSBQ8NFR3 76 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 NPBQ8NG41 125 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 ZCCHC13Q8WW36 166 aaKnown RBP2.19□□□□□ -2.06
VPS35-203ENST00000562420 HIGD2AQ9BW72 106 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 BPTFQ12830 3046 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 XIRP2A4UGR9 3374 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 SZT2Q5T011 3432 aa2.19□□□□□ -2.06
VPS35-203ENST00000562420 MYO7BQ6PIF6 2116 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGLV3-12A0A075B6K2 115 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGLV3-9A0A075B6K5 115 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGKV3D-11A0A0A0MRZ8 115 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGHV3-73A0A0B4J1V6 119 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGHV1-3A0A0C4DH29 117 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 LHBP01229 141 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 IGHV1-46P01743 117 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 CLPSP04118 112 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 CGB3P0DN86 165 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 CGB7P0DN87 165 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 HCP5Q6MZN7 132 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 LYPD2Q6UXB3 125 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 Q6ZQT0 140 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms