RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 HSPG2P98160 4391 aa6.37□□□□□ -1.39
SPG11-214ENST00000558989 RPS10P46783 165 aaKnown RBP6.36□□□□□ -1.39
SPG11-214ENST00000558989 Q0VG73 95 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 Q6ZN92 141 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 MRPL55Q7Z7F7 128 aaKnown RBP6.36□□□□□ -1.39
SPG11-214ENST00000558989 OR13C6PQ8NH95 151 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 RNF185Q96GF1 192 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 KRTAP4-5Q9BYR2 181 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 TMEM191AQ9H0A3 160 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 SMDT1Q9H4I9 107 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 TRAV8-4A0A0B4J246 113 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 E9PLD3 99 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 ST20Q9HBF5 79 aa6.36□□□□□ -1.39
SPG11-214ENST00000558989 SMIM27A0A1W2PRY6 76 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 APCSP02743 223 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 PKIAP61925 76 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 REG3AQ06141 175 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 AMMECR1LQ6DCA0 310 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 C20orf203Q8NBC4 194 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 TMEM242Q9NWH2 141 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 COX11Q9Y6N1 276 aa6.35□□□□□ -1.39
SPG11-214ENST00000558989 IGLV5-37A0A075B6J1 123 aa6.34□□□□□ -1.39
SPG11-214ENST00000558989 A0A0U1RQV1 116 aa6.34□□□□□ -1.39
SPG11-214ENST00000558989 ABCA13Q86UQ4 5058 aa6.34□□□□□ -1.39
SPG11-214ENST00000558989 PCLOQ9Y6V0 5065 aa6.34□□□□□ -1.39
SPG11-214ENST00000558989 I3L3M4 83 aa6.34□□□□□ -1.4
SPG11-214ENST00000558989 SMR3BP02814 79 aaPredicted RBP6.34□□□□□ -1.4
SPG11-214ENST00000558989 ESDP10768 282 aa6.34□□□□□ -1.4
SPG11-214ENST00000558989 MIAQ16674 131 aa6.34□□□□□ -1.4
SPG11-214ENST00000558989 FRZBQ92765 325 aa6.34□□□□□ -1.4
SPG11-214ENST00000558989 TSHBP01222 138 aa6.33□□□□□ -1.4
SPG11-214ENST00000558989 MRPL51Q4U2R6 128 aaKnown RBP6.33□□□□□ -1.4
SPG11-214ENST00000558989 MPLKIPQ8TAP9 179 aa6.33□□□□□ -1.4
SPG11-214ENST00000558989 NTN5Q8WTR8 489 aaPredicted RBP6.33□□□□□ -1.4
SPG11-214ENST00000558989 C12orf57Q99622 126 aa6.33□□□□□ -1.4
SPG11-214ENST00000558989 TMEM70Q9BUB7 260 aa6.33□□□□□ -1.4
SPG11-214ENST00000558989 LINC00862A6NCI5 91 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 PMVKQ15126 192 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 FAM104BQ5XKR9 115 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 PRR34Q9NV39 138 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 FGF6P10767 208 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 FCER1GP30273 86 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 CKS2P33552 79 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 HBBP68871 147 aa6.32□□□□□ -1.4
SPG11-214ENST00000558989 TRBV6-5A0A0K0K1A5 114 aa6.31□□□□□ -1.4
SPG11-214ENST00000558989 A0A1B0GUV1 79 aa6.31□□□□□ -1.4
SPG11-214ENST00000558989 D6R8Y8 96 aa6.31□□□□□ -1.4
SPG11-214ENST00000558989 NRACQ8N912 160 aa6.31□□□□□ -1.4
SPG11-214ENST00000558989 KIR2DL4Q99706 377 aa6.31□□□□□ -1.4
SPG11-214ENST00000558989 POLR2KP53803 58 aaKnown RBP6.3□□□□□ -1.4
SPG11-214ENST00000558989 MT-ND4LP03901 98 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 PRSS1P07477 247 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 ADCYAP1P18509 176 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 RNASE13Q5GAN3 156 aaKnown RBP6.29□□□□□ -1.4
SPG11-214ENST00000558989 KRTAP26-1Q6PEX3 210 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 Q8N1X5 172 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 TMEM101Q96IK0 257 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 A0A1B0GXF2 115 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 DLEU1O43261 78 aa6.29□□□□□ -1.4
SPG11-214ENST00000558989 TRBV27A0A0K0K1C4 114 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 C7orf77A4D0Y5 90 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 NPYP01303 97 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 S100A8P05109 93 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 C14orf177Q52M58 125 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 OR5A1Q8NGJ0 315 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 CHCHD10Q8WYQ3 142 aaPredicted RBP6.28□□□□□ -1.4
SPG11-214ENST00000558989 DNAH8Q96JB1 4490 aa6.28□□□□□ -1.4
SPG11-214ENST00000558989 TMEM218A2RU14 115 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 EPM2AB3EWF7 344 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 SS18L2Q9UHA2 77 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 LOC389332A0A1B0GUA5 103 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 H7C423 109 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 PPP1R17O96001 155 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 LORP23490 312 aaPredicted RBP6.27□□□□□ -1.41
SPG11-214ENST00000558989 XCL1P47992 114 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 HIGD2BQ4VC39 106 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 NOTCH2NLQ7Z3S9 236 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 HIST1H4GQ99525 98 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 FAT1Q14517 4588 aa6.27□□□□□ -1.41
SPG11-214ENST00000558989 RPL39P62891 51 aaKnown RBP6.26□□□□□ -1.41
SPG11-214ENST00000558989 Q5VSD8 79 aa6.26□□□□□ -1.41
SPG11-214ENST00000558989 TMEM136Q6ZRR5 245 aa6.26□□□□□ -1.41
SPG11-214ENST00000558989 PRELID3AQ96N28 172 aa6.26□□□□□ -1.41
SPG11-214ENST00000558989 IGHV3OR16-9A0A0B4J2B5 98 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 CCL25O15444 150 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 PRSS2P07478 247 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 ZNF25P17030 456 aaPredicted RBP6.25□□□□□ -1.41
SPG11-214ENST00000558989 C10orf25Q5T742 122 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 ATP5L2Q7Z4Y8 100 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 ORMDL3Q8N138 153 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 SMIM2Q9BVW6 85 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 LINC00959A0A1B0GUT2 108 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 PRR3P79522 188 aaKnown RBP6.25□□□□□ -1.41
SPG11-214ENST00000558989 ZNF664Q8N3J9 261 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 LINC00526Q96FQ7 95 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 C20orf78Q9BR46 151 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 CDC42SE2Q9NRR3 84 aa6.25□□□□□ -1.41
SPG11-214ENST00000558989 TRBV24-1A0A075B6N3 115 aa6.24□□□□□ -1.41
SPG11-214ENST00000558989 TRAV13-1A0A0B4J241 112 aa6.24□□□□□ -1.41
SPG11-214ENST00000558989 SS18Q15532 418 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms