RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MTORP42345 2549 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 HIVEP2P31629 2446 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 IGLV5-45A0A087WSX0 123 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 CYSRT1A8MQ03 144 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 OXTP01178 125 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 CFHR3Q02985 330 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 PRIMA1Q86XR5 153 aa7.9□□□□□ -1.14
USP3-206ENST00000558157 TRAV12-3A0A0B4J271 114 aa7.9□□□□□ -1.15
USP3-206ENST00000558157 INAFM1C9JVW0 142 aa7.9□□□□□ -1.15
USP3-206ENST00000558157 SYNJ2BPP57105 145 aa7.9□□□□□ -1.15
USP3-206ENST00000558157 DSCR8Q96T75 97 aa7.89□□□□□ -1.15
USP3-206ENST00000558157 USP17L23D6RBM5 183 aa7.89□□□□□ -1.15
USP3-206ENST00000558157 HRCT1Q6UXD1 115 aa7.89□□□□□ -1.15
USP3-206ENST00000558157 C10orf99Q6UWK7 81 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 OBSCN-AS1Q96MR7 158 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 F6UB75 175 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 H3BUA1 57 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 IGLV1-40P01703 118 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 HIST2H2BDQ6DRA6 164 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 Q8N2B8 174 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 PRO0628Q9UI54 55 aa7.88□□□□□ -1.15
USP3-206ENST00000558157 NSD1Q96L73 2696 aaPredicted RBP7.87□□□□□ -1.15
USP3-206ENST00000558157 RPL28P46779 137 aaKnown RBP7.87□□□□□ -1.15
USP3-206ENST00000558157 TRAV13-2A0A0B4J235 113 aa7.87□□□□□ -1.15
USP3-206ENST00000558157 IGLV5-39A0A0G2JS06 123 aa7.87□□□□□ -1.15
USP3-206ENST00000558157 RNASE1P07998 156 aaKnown RBP7.87□□□□□ -1.15
USP3-206ENST00000558157 HILS1P60008 231 aa7.87□□□□□ -1.15
USP3-206ENST00000558157 UBE2D4Q9Y2X8 147 aa7.87□□□□□ -1.15
USP3-206ENST00000558157 PSMB8P28062 276 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 DEFB1P60022 68 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 S100A7L2Q5SY68 101 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 ATP5EP2Q5VTU8 51 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 LINC01561Q8N1V8 128 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 EPM2AB3EWF7 344 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 UNQ9165/PRO28630Q6UXU0 137 aa7.86□□□□□ -1.15
USP3-206ENST00000558157 A8MZ25 164 aa7.85□□□□□ -1.15
USP3-206ENST00000558157 IGHV3-11P01762 117 aa7.85□□□□□ -1.15
USP3-206ENST00000558157 RNF152Q8N8N0 203 aa7.85□□□□□ -1.15
USP3-206ENST00000558157 FAM218AQ96MZ4 157 aa7.85□□□□□ -1.15
USP3-206ENST00000558157 IGHV1OR15-1A0A075B7D0 117 aa7.84□□□□□ -1.15
USP3-206ENST00000558157 USMG5Q96IX5 58 aa7.84□□□□□ -1.15
USP3-206ENST00000558157 Q9H8V8 135 aa7.84□□□□□ -1.15
USP3-206ENST00000558157 FN1P02751 2386 aaKnown RBP7.84□□□□□ -1.15
USP3-206ENST00000558157 CDKN2A-AS1Q9UH64 79 aa7.84□□□□□ -1.15
USP3-206ENST00000558157 IGKV3D-7A0A0C4DH55 119 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 TMEM89A2RUT3 159 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 H0YGX0 51 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 TRBV12-3P01733 135 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 LINC00846Q9NV44 126 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 F8P00451 2351 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 BCE1O60756 84 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 SOSTDC1Q6X4U4 206 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 FAM19A3Q7Z5A8 133 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 CHCHD7Q9BUK0 85 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 RHPN1-AS1Q9BWJ2 59 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 SERP1Q9Y6X1 66 aa7.83□□□□□ -1.16
USP3-206ENST00000558157 NF1P21359 2839 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 TRAV12-2A0A075B6T6 113 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 F8WDY8 70 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 PFN2P35080 140 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 PIK3CD-AS1Q5SR53 167 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 FHL2Q14192 279 aa7.82□□□□□ -1.16
USP3-206ENST00000558157 TRBV10-3A0A0K0K1G6 114 aa7.81□□□□□ -1.16
USP3-206ENST00000558157 FAM236DA0A1B0GTK5 79 aa7.81□□□□□ -1.16
USP3-206ENST00000558157 CRPP02741 224 aa7.81□□□□□ -1.16
USP3-206ENST00000558157 FAM236CP0DP71 79 aa7.81□□□□□ -1.16
USP3-206ENST00000558157 RNASE13Q5GAN3 156 aaKnown RBP7.81□□□□□ -1.16
USP3-206ENST00000558157 K7EMT4 169 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 ZNF625Q96I27 306 aaPredicted RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 C16orf95Q9H693 158 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 Q9HAA7 133 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 C14orf132Q9NPU4 83 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 A0A087WVE0 104 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1BA6NDE4 496 aaKnown RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1EA6NEQ0 496 aaKnown RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1DP0C7P1 496 aaKnown RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1A1P0DJD3 496 aaKnown RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1CP0DJD4 496 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 RBMY1FQ15415 496 aaKnown RBP7.8□□□□□ -1.16
USP3-206ENST00000558157 LINC01006Q8NI28 216 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 TMEM243Q9BU79 118 aa7.8□□□□□ -1.16
USP3-206ENST00000558157 GHRHP01286 108 aa7.79□□□□□ -1.16
USP3-206ENST00000558157 C18orf65Q6ZTR6 163 aa7.79□□□□□ -1.16
USP3-206ENST00000558157 NACAE9PAV3 2078 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 KHDC1LQ5JSQ8 128 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 UBE2E2Q96LR5 201 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 SMIM1B2RUZ4 78 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 CCKP06307 115 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 LYPD5Q6UWN5 251 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 LINC00467Q9BRT7 94 aa7.78□□□□□ -1.16
USP3-206ENST00000558157 IGKV3-7A0A075B6H7 116 aa7.77□□□□□ -1.17
USP3-206ENST00000558157 C11orf44Q8N8P7 122 aa7.77□□□□□ -1.17
USP3-206ENST00000558157 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.77□□□□□ -1.17
USP3-206ENST00000558157 IGKV2-29A2NJV5 120 aaPredicted RBP7.77□□□□□ -1.17
USP3-206ENST00000558157 SNRPD3P62318 126 aaKnown RBP7.77□□□□□ -1.17
USP3-206ENST00000558157 LINC00242Q5T6M2 205 aa7.77□□□□□ -1.17
USP3-206ENST00000558157 DGAT2L7PQ6IED9 249 aa7.77□□□□□ -1.17
USP3-206ENST00000558157 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.77□□□□□ -1.17
USP3-206ENST00000558157 DEFB136Q30KP8 78 aa7.76□□□□□ -1.17
USP3-206ENST00000558157 RS1O15537 224 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms