RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 F5H768 121 aa11.65□□□□□ -0.54
SHMT2-232ENST00000557487 LINC00643Q86TS7 51 aa11.65□□□□□ -0.54
SHMT2-232ENST00000557487 CDC42SE2Q9NRR3 84 aa11.65□□□□□ -0.54
SHMT2-232ENST00000557487 INAFM2P0DMQ5 153 aa11.64□□□□□ -0.55
SHMT2-232ENST00000557487 SOSTDC1Q6X4U4 206 aa11.64□□□□□ -0.55
SHMT2-232ENST00000557487 C18orf65Q6ZTR6 163 aa11.64□□□□□ -0.55
SHMT2-232ENST00000557487 TRGV1A0A0A0MS02 117 aa11.63□□□□□ -0.55
SHMT2-232ENST00000557487 ATP5G1P05496 136 aa11.63□□□□□ -0.55
SHMT2-232ENST00000557487 HIST2H2BDQ6DRA6 164 aa11.63□□□□□ -0.55
SHMT2-232ENST00000557487 SDIM1Q6ZPB5 146 aa11.63□□□□□ -0.55
SHMT2-232ENST00000557487 STHQ8IWL8 128 aa11.63□□□□□ -0.55
SHMT2-232ENST00000557487 TRAV13-1A0A0B4J241 112 aa11.62□□□□□ -0.55
SHMT2-232ENST00000557487 LINC00694P0DN24 101 aa11.62□□□□□ -0.55
SHMT2-232ENST00000557487 C1orf158Q8N1D5 194 aa11.62□□□□□ -0.55
SHMT2-232ENST00000557487 BAALC-AS2P0C853 105 aa11.62□□□□□ -0.55
SHMT2-232ENST00000557487 RPL28P46779 137 aaKnown RBP11.62□□□□□ -0.55
SHMT2-232ENST00000557487 SVEP1Q4LDE5 3571 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 IGHV4-31P0DP07 118 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 NTM-AS1Q6ZSK4 140 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 TMEM243Q9BU79 118 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 XCL2Q9UBD3 114 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 ITPR3Q14573 2671 aa11.61□□□□□ -0.55
SHMT2-232ENST00000557487 UBE2L6O14933 153 aa11.6□□□□□ -0.55
SHMT2-232ENST00000557487 CMC4P56277 68 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-232ENST00000557487 ODF3L2Q3SX64 289 aa11.6□□□□□ -0.55
SHMT2-232ENST00000557487 SORL1Q92673 2214 aa11.6□□□□□ -0.55
SHMT2-232ENST00000557487 CXCL5P42830 114 aa11.6□□□□□ -0.55
SHMT2-232ENST00000557487 TMEM126AQ9H061 195 aa11.6□□□□□ -0.55
SHMT2-232ENST00000557487 HIVEP1P15822 2718 aa11.59□□□□□ -0.55
SHMT2-232ENST00000557487 F8P00451 2351 aa11.59□□□□□ -0.55
SHMT2-232ENST00000557487 CRPP02741 224 aa11.58□□□□□ -0.55
SHMT2-232ENST00000557487 TMEM86BQ8N661 226 aa11.58□□□□□ -0.55
SHMT2-232ENST00000557487 CSPG4Q6UVK1 2322 aa11.58□□□□□ -0.56
SHMT2-232ENST00000557487 A0A0U1RRA0 63 aa11.58□□□□□ -0.56
SHMT2-232ENST00000557487 KHDC1LQ5JSQ8 128 aa11.58□□□□□ -0.56
SHMT2-232ENST00000557487 KRTAP1-1Q07627 177 aa11.57□□□□□ -0.56
SHMT2-232ENST00000557487 MAPK1IP1LQ8NDC0 245 aa11.57□□□□□ -0.56
SHMT2-232ENST00000557487 SMR3AQ99954 134 aa11.57□□□□□ -0.56
SHMT2-232ENST00000557487 ZNF469Q96JG9 3925 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-232ENST00000557487 LY6G6DO95868 133 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 COX7B2Q8TF08 81 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 VPS13CQ709C8 3753 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 H0YGX0 51 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 NDUFA7O95182 113 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 Q6ZTI0 123 aa11.56□□□□□ -0.56
SHMT2-232ENST00000557487 MALP21145 153 aa11.55□□□□□ -0.56
SHMT2-232ENST00000557487 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
SHMT2-232ENST00000557487 FAM236AA0A1B0GUQ0 79 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 FAM236BA0A1B0GV22 79 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 TRBV6-4A0A1B0GX49 114 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 FAM110AQ9BQ89 295 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 C16orf74Q96GX8 76 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 CR1P17927 2039 aa11.54□□□□□ -0.56
SHMT2-232ENST00000557487 SMCR5Q8TEV8 140 aa11.53□□□□□ -0.56
SHMT2-232ENST00000557487 FAM218AQ96MZ4 157 aa11.53□□□□□ -0.56
SHMT2-232ENST00000557487 SND1-IT1Q9HBX3 110 aa11.53□□□□□ -0.56
SHMT2-232ENST00000557487 C22orf24Q9Y442 160 aa11.53□□□□□ -0.56
SHMT2-232ENST00000557487 FLNAP21333 2647 aaKnown RBP11.53□□□□□ -0.56
SHMT2-232ENST00000557487 IBA57-AS1B1ANH7 110 aa11.52□□□□□ -0.56
SHMT2-232ENST00000557487 C5orf38Q86SI9 138 aa11.52□□□□□ -0.56
SHMT2-232ENST00000557487 CELSR1Q9NYQ6 3014 aa11.52□□□□□ -0.57
SHMT2-232ENST00000557487 DNAL4O96015 105 aa11.52□□□□□ -0.57
SHMT2-232ENST00000557487 MIR7-3HGQ8N6C7 128 aa11.52□□□□□ -0.57
SHMT2-232ENST00000557487 ACANP16112 2415 aa11.52□□□□□ -0.57
SHMT2-232ENST00000557487 ZFHX3Q15911 3703 aa11.51□□□□□ -0.57
SHMT2-232ENST00000557487 UQCRQO14949 82 aa11.5□□□□□ -0.57
SHMT2-232ENST00000557487 LINC00337Q8N6G1 96 aa11.5□□□□□ -0.57
SHMT2-232ENST00000557487 NOP10Q9NPE3 64 aaKnown RBP11.5□□□□□ -0.57
SHMT2-232ENST00000557487 IGKV2-28A0A075B6P5 120 aa11.49□□□□□ -0.57
SHMT2-232ENST00000557487 IGKV2D-28P01615 120 aa11.49□□□□□ -0.57
SHMT2-232ENST00000557487 C3orf22Q8N5N4 141 aa11.49□□□□□ -0.57
SHMT2-232ENST00000557487 MAP1AP78559 2803 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-232ENST00000557487 TRGV2A0A075B6R0 118 aa11.48□□□□□ -0.57
SHMT2-232ENST00000557487 CCL24O00175 119 aa11.48□□□□□ -0.57
SHMT2-232ENST00000557487 GAGE2AQ6NT46 116 aa11.48□□□□□ -0.57
SHMT2-232ENST00000557487 OBSCN-AS1Q96MR7 158 aa11.48□□□□□ -0.57
SHMT2-232ENST00000557487 A0A087WZ39 114 aa11.47□□□□□ -0.57
SHMT2-232ENST00000557487 IGHV3OR16-9A0A0B4J2B5 98 aa11.47□□□□□ -0.57
SHMT2-232ENST00000557487 LINC00158P58513 81 aa11.47□□□□□ -0.57
SHMT2-232ENST00000557487 SMIM11BQ8TCY0 68 aa11.47□□□□□ -0.57
SHMT2-232ENST00000557487 PLAC8L1A1L4L8 177 aa11.47□□□□□ -0.57
SHMT2-232ENST00000557487 TRBV6-8A0A0A6YYG3 113 aa11.46□□□□□ -0.58
SHMT2-232ENST00000557487 CCL18P55774 89 aa11.46□□□□□ -0.58
SHMT2-232ENST00000557487 LINC00526Q96FQ7 95 aa11.46□□□□□ -0.58
SHMT2-232ENST00000557487 SMIM20Q8N5G0 67 aa11.45□□□□□ -0.58
SHMT2-232ENST00000557487 Q9HAA7 133 aa11.45□□□□□ -0.58
SHMT2-232ENST00000557487 TOMM7Q9P0U1 55 aa11.45□□□□□ -0.58
SHMT2-232ENST00000557487 TRGV4A0A0C4DH28 118 aa11.45□□□□□ -0.58
SHMT2-232ENST00000557487 INAFM1C9JVW0 142 aa11.45□□□□□ -0.58
SHMT2-232ENST00000557487 HIST1H4AP62805 103 aaKnown RBP11.45□□□□□ -0.58
SHMT2-232ENST00000557487 ATOX1O00244 68 aa11.44□□□□□ -0.58
SHMT2-232ENST00000557487 C9orf153Q5TBE3 101 aa11.44□□□□□ -0.58
SHMT2-232ENST00000557487 TEP1Q99973 2627 aaKnown RBP11.43□□□□□ -0.58
SHMT2-232ENST00000557487 GIG44P09565 113 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-232ENST00000557487 LINC01561Q8N1V8 128 aa11.43□□□□□ -0.58
SHMT2-232ENST00000557487 Q6JHZ5 121 aa11.43□□□□□ -0.58
SHMT2-232ENST00000557487 C11orf44Q8N8P7 122 aa11.43□□□□□ -0.58
SHMT2-232ENST00000557487 KLK5Q9Y337 293 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-232ENST00000557487 A0A087WYN8 130 aa11.42□□□□□ -0.58
SHMT2-232ENST00000557487 A0A1B0GX51 115 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 181 ms